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Package Bio :: Package config :: Module DBRegistry |
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Implements Registry to access databases. These objects access databases using a dictionary-like interface, where the key is the ID of the thing to look up, and the value returned is the data associated with the key.
Classes: DBRegistry Accesses databases with a dictionary-like interface. DBObject Base class for Registry objects for databases. DBGroup Groups DBObjects.
CGIDB Accesses CGI databases. EUtilsDB Accesses NCBI using EUtils. BioSQLDB Accesses a BioSQL database. BioCorbaDB Accesses a BioCorba database. IndexedFileDB Accesses a Mindy Indexed file.Classes | |
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BioCorbaDB |
Represent a BioCorba BioSequenceCollection for SeqRecord objects. |
BioSQLDB |
Represent a BioSQL-style database to retrieve SeqRecord objects. |
CGIDB |
This class implements DBObject for accessing CGI databases. |
DBGroup |
Groups DBObjects that return the same kind of data. |
DBObject |
This is a base class for dictionary-like interfaces to databases. |
DBRegistry |
This implements a dictionary-like interface to databases. |
EUtilsDB |
Implement DBObject for accessing EUtils databases at NCBI. |
IndexedFileDB |
Return SeqRecord objects from an indexed file. |
TextLikeMixin |
Mixin class with useful functionality for retrival of text files. |
Variable Summary | |
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DBRegistry |
db = db, exporting 'embl', 'embl-dbfetch-cgi', 'embl-ebi...
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Variable Details |
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db
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