Package Martel :: Package test :: Package testformats :: Module swissprot38
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Module Martel.test.testformats.swissprot38

Parser for the SWISS-PROT 38 format.

You probably want to use the variables 'record' (for a single record) and 'format' (for a set of records).
Function Summary
  Simple(tag, tag_data)

Variable Summary
Group AC = <Martel.Expression.Group instance at 0x2aaaae805c20...
Group AC_block = <Martel.Expression.Group instance at 0x2aaaae...
Group bogus_DR_group = <Martel.Expression.Group instance at 0x...
Group CC = <Martel.Expression.Group instance at 0x2aaaae7c14d0...
Group CC_begin = <Martel.Expression.Group instance at 0x2aaaae...
Group CC_copyright = <Martel.Expression.Group instance at 0x2a...
Group CC_copyright_begin = <Martel.Expression.Group instance a...
Group CC_copyright_end = <Martel.Expression.Group instance at ...
Group comment = <Martel.Expression.Group instance at 0x2aaaae7...
Group DE = <Martel.Expression.Group instance at 0x2aaaae7bacb0...
Group DE_block = <Martel.Expression.Group instance at 0x2aaaae...
Group DR = <Martel.Expression.Group instance at 0x2aaaae7c4128...
Group DR_block = <Martel.Expression.Group instance at 0x2aaaae...
Seq DR_embl = <Martel.Expression.Seq instance at 0x2aaaae7c5...
Seq DR_general = <Martel.Expression.Seq instance at 0x2aaaae...
Seq DR_prosite = <Martel.Expression.Seq instance at 0x2aaaae...
Group DT_ann_update = <Martel.Expression.Group instance at 0x2...
Group DT_created = <Martel.Expression.Group instance at 0x2aaa...
Group DT_seq_update = <Martel.Expression.Group instance at 0x2...
Group end = <Martel.Expression.Group instance at 0x2aaaae7c7b4...
Group feature_block = <Martel.Expression.Group instance at 0x2...
ParseRecords format = <Martel.Expression.ParseRecords instance at 0x2...
Group format_expression = <Martel.Expression.Group instance at...
Group FT = <Martel.Expression.Group instance at 0x2aaaae7c6560...
Group FT_continuation = <Martel.Expression.Group instance at 0...
Group FT_range = <Martel.Expression.Group instance at 0x2aaaae...
Group GN = <Martel.Expression.Group instance at 0x2aaaae7bb200...
Group GN_block = <Martel.Expression.Group instance at 0x2aaaae...
Group ID = <Martel.Expression.Group instance at 0x2aaaae805b48...
Group KW = <Martel.Expression.Group instance at 0x2aaaae7c5ab8...
Group KW_block = <Martel.Expression.Group instance at 0x2aaaae...
Group OC = <Martel.Expression.Group instance at 0x2aaaae7bbc20...
Group OC_block = <Martel.Expression.Group instance at 0x2aaaae...
Group OG = <Martel.Expression.Group instance at 0x2aaaae7bb8c0...
Group OG_block = <Martel.Expression.Group instance at 0x2aaaae...
Group OS = <Martel.Expression.Group instance at 0x2aaaae7bb560...
Group OS_block = <Martel.Expression.Group instance at 0x2aaaae...
Group RA = <Martel.Expression.Group instance at 0x2aaaae7bf0e0...
Group RA_block = <Martel.Expression.Group instance at 0x2aaaae...
Group RC = <Martel.Expression.Group instance at 0x2aaaae7be680...
Group RC_block = <Martel.Expression.Group instance at 0x2aaaae...
Group record = <Martel.Expression.Group instance at 0x2aaaae7c...
Group reference = <Martel.Expression.Group instance at 0x2aaaa...
Group RL = <Martel.Expression.Group instance at 0x2aaaae7bf6c8...
Group RL_block = <Martel.Expression.Group instance at 0x2aaaae...
Group RN = <Martel.Expression.Group instance at 0x2aaaae7bbfc8...
Group RP = <Martel.Expression.Group instance at 0x2aaaae7be098...
Group RT = <Martel.Expression.Group instance at 0x2aaaae7bf368...
Group RT_block = <Martel.Expression.Group instance at 0x2aaaae...
Group RX = <Martel.Expression.Group instance at 0x2aaaae7bea28...
Group sequence = <Martel.Expression.Group instance at 0x2aaaae...
Group single_comment = <Martel.Expression.Group instance at 0x...
Group SQ = <Martel.Expression.Group instance at 0x2aaaae7c6758...
Group SQ_data = <Martel.Expression.Group instance at 0x2aaaae7...

Variable Details

AC

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae805c20>                   

AC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae805bd8>                   

bogus_DR_group

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c1ea8>                   

CC

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c14d0>                   

CC_begin

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bffc8>                   

CC_copyright

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c1e18>                   

CC_copyright_begin

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c1710>                   

CC_copyright_end

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c1f38>                   

comment

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c2368>                   

DE

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bacb0>                   

DE_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bb128>                   

DR

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c4128>                   

DR_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c59e0>                   

DR_embl

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae7c5950>                     

DR_general

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae7c4830>                     

DR_prosite

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae7c52d8>                     

DT_ann_update

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae836dd0>                   

DT_created

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae805d88>                   

DT_seq_update

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae836e60>                   

end

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c7b48>                   

feature_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c6638>                   

format

Type:
ParseRecords
Value:
<Martel.Expression.ParseRecords instance at 0x2aaaae7c80e0>            

format_expression

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c8050>                   

FT

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c6560>                   

FT_continuation

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c5f38>                   

FT_range

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c5e60>                   

GN

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bb200>                   

GN_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bb488>                   

ID

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae805b48>                   

KW

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c5ab8>                   

KW_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c5d40>                   

OC

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bbc20>                   

OC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bbea8>                   

OG

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bb8c0>                   

OG_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bbb48>                   

OS

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bb560>                   

OS_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bb7e8>                   

RA

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bf0e0>                   

RA_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bf290>                   

RC

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7be680>                   

RC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7be908>                   

record

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c7ef0>                   

reference

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bfb00>                   

RL

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bf6c8>                   

RL_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bf950>                   

RN

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bbfc8>                   

RP

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7be098>                   

RT

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bf368>                   

RT_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bf5f0>                   

RX

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7bea28>                   

sequence

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c79e0>                   

single_comment

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c15f0>                   

SQ

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c6758>                   

SQ_data

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae7c6830>                   

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