Package Bio :: Package WWW :: Module ExPASy
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Module Bio.WWW.ExPASy

This module provides code to access resources at ExPASy over the WWW. http://www.expasy.ch/

Functions: get_prodoc_entry Interface to the get-prodoc-entry CGI script. get_prosite_entry Interface to the get-prosite-entry CGI script. get_sprot_raw Interface to the get-sprot-raw.pl CGI script. sprot_search_ful Interface to the sprot-search-ful CGI script. sprot_search_de Interface to the sprot-search-de CGI script. _open
Function Summary
  get_prodoc_entry(id, cgi)
get_prodoc_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prodoc-entry') -> handle
  get_prosite_entry(id, cgi)
get_prosite_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prosite-entry') -> handle
  get_sprot_raw(id, cgi)
get_sprot_raw(id, cgi='http://www.expasy.ch/cgi-bin/get-sprot-raw.pl') -> handle
  scanprosite1(seq, id, exclude_frequent, cgi)
scanprosite1(seq=None, id=None, exclude_frequent=None, cgi='http://expasy.cbr.nrc.ca/cgi-bin/scanprosite/scanprosite?1') -> handle
  sprot_search_de(text, swissprot, trembl, cgi)
sprot_search_de(text, swissprot=1, trembl=None, cgi='http://www.expasy.ch/cgi-bin/sprot-search-de') -> handle
  sprot_search_ful(text, make_wild, swissprot, trembl, cgi)
sprot_search_ful(text, make_wild=None, swissprot=1, trembl=None, cgi='http://www.expasy.ch/cgi-bin/sprot-search-ful') -> handle

Function Details

get_prodoc_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prodoc-entry')

get_prodoc_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prodoc-entry') -> handle

Get a handle to a PRODOC entry at ExPASy.

get_prosite_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prosite-entry')

get_prosite_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prosite-entry') -> handle

Get a handle to a PROSITE entry at ExPASy.

get_sprot_raw(id, cgi='http://www.expasy.ch/cgi-bin/get-sprot-raw.pl')

get_sprot_raw(id, cgi='http://www.expasy.ch/cgi-bin/get-sprot-raw.pl') -> handle

Get a handle to a raw SwissProt entry at ExPASy.

scanprosite1(seq=None, id=None, exclude_frequent=None, cgi='http://expasy.cbr.nrc.ca/cgi-bin/scanprosite/scanprosite?1')

scanprosite1(seq=None, id=None, exclude_frequent=None, cgi='http://expasy.cbr.nrc.ca/cgi-bin/scanprosite/scanprosite?1') -> handle

Scan a sequence for a Prosite pattern. Either a sequence or a SwissProt/ trEMBL sequence can be passed. exclude_frequent specifies whether to exclude patterns with high probability.

sprot_search_de(text, swissprot=1, trembl=None, cgi='http://www.expasy.ch/cgi-bin/sprot-search-de')

sprot_search_de(text, swissprot=1, trembl=None, cgi='http://www.expasy.ch/cgi-bin/sprot-search-de') -> handle

Search SwissProt by name, description, gene name, species, or organelle.

sprot_search_ful(text, make_wild=None, swissprot=1, trembl=None, cgi='http://www.expasy.ch/cgi-bin/sprot-search-ful')

sprot_search_ful(text, make_wild=None, swissprot=1, trembl=None, cgi='http://www.expasy.ch/cgi-bin/sprot-search-ful') -> handle

Search SwissProt by full text.

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