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Package Bio :: Package Prosite :: Module Pattern |
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Classes | |
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Prosite |
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PrositeAlphabet |
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PrositeMatch |
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PrositeTerm |
Function Summary | |
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compile(pattern)
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find_terms(pattern)
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pattern_mapping(prosite,
mapping)
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convert a valid Prosite pattern into an re with groups for each term | |
convert a valid Prosite pattern into an re string | |
returns 1 if the Prosite pattern is syntactically correct, else 0 | |
verify the patterns from a Prosite file handle |
Function Details |
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prosite_to_grouped_re(pattern)convert a valid Prosite pattern into an re with groups for each term |
prosite_to_re(pattern)convert a valid Prosite pattern into an re string |
verify_pattern(pattern)returns 1 if the Prosite pattern is syntactically correct, else 0 |
_verify_test(infile)verify the patterns from a Prosite file handle |
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