Package Bio :: Package Blast :: Module Record :: Class MultipleAlignment
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Class MultipleAlignment


Holds information about a multiple alignment.

Members: alignment A list of tuples (name, start residue, sequence, end residue).

The start residue is 1-based. It may be blank, if that sequence is not aligned in the multiple alignment.
Method Summary
  __init__(self)
  to_generic(self, alphabet)
Retrieve generic alignment object for the given alignment.

Method Details

to_generic(self, alphabet)

Retrieve generic alignment object for the given alignment.

Instead of the tuples, this returns an Alignment object from Bio.Align.Generic, through which you can manipulate and query the object.

alphabet is the specified alphabet for the sequences in the code (for example IUPAC.IUPACProtein.

Thanks to James Casbon for the code.

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