Package Bio :: Package Blast :: Module NCBIStandalone :: Class _BlastErrorConsumer
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Class _BlastErrorConsumer

       AbstractConsumer --+    
                          |    
     _AlignmentConsumer --+    
                          |    
_DatabaseReportConsumer --+    
                          |    
   _DescriptionConsumer --+    
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        _HeaderConsumer --+    
                          |    
           _HSPConsumer --+    
                          |    
    _ParametersConsumer --+    
                          |    
             _BlastConsumer --+
                              |
                             _BlastErrorConsumer


Method Summary
  __init__(self)
  noevent(self, line)
    Inherited from _BlastConsumer
  end_alignment(self)
  end_database_report(self)
  end_descriptions(self)
  end_header(self)
  end_hsp(self)
  end_parameters(self)
  round(self, line)
  start_header(self)
    Inherited from AbstractConsumer
  __getattr__(self, attr)
  _unhandled(self, data)
  _unhandled_section(self)
    Inherited from _HeaderConsumer
  database_info(self, line)
  query_info(self, line)
  reference(self, line)
  version(self, line)
    Inherited from _DescriptionConsumer
  _parse(self, description_line)
  converged(self, line)
  description(self, line)
  description_header(self, line)
  model_sequences(self, line)
  no_hits(self, line)
  nonmodel_sequences(self, line)
  start_descriptions(self)
    Inherited from _AlignmentConsumer
  length(self, line)
  multalign(self, line)
  start_alignment(self)
  title(self, line)
    Inherited from _HSPConsumer
  align(self, line)
  frame(self, line)
  identities(self, line)
  query(self, line)
  sbjct(self, line)
  score(self, line)
  start_hsp(self)
  strand(self, line)
    Inherited from _DatabaseReportConsumer
  database(self, line)
  gapped(self, line)
  ka_params(self, line)
  ka_params_gap(self, line)
  num_letters_in_database(self, line)
  num_sequences_in_database(self, line)
  posted_date(self, line)
  start_database_report(self)
    Inherited from _ParametersConsumer
  blast_cutoff(self, line)
  database_length(self, line)
  dropoff_1st_pass(self, line)
  effective_database_length(self, line)
  effective_hsp_length(self, line)
  effective_query_length(self, line)
  effective_search_space(self, line)
  effective_search_space_used(self, line)
  frameshift(self, line)
  gap_penalties(self, line)
  gap_trigger(self, line)
  gap_x_dropoff(self, line)
  gap_x_dropoff_final(self, line)
  hsps_gapped(self, line)
  hsps_no_gap(self, line)
  hsps_prelim_gapped(self, line)
  hsps_prelim_gapped_attempted(self, line)
  matrix(self, line)
  num_extends(self, line)
  num_good_extends(self, line)
  num_hits(self, line)
  num_seqs_better_e(self, line)
  num_sequences(self, line)
  query_length(self, line)
  start_parameters(self)
  threshold(self, line)
  window_size(self, line)

Class Variable Summary
    Inherited from _HSPConsumer
SRE_Pattern _query_re = Query: \s*(\d+)\s*(.+) (\d+)

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