Package Bio :: Package NeuralNetwork :: Package Gene :: Module Schema :: Class SchemaDNAAlphabet
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Class SchemaDNAAlphabet

Alphabet --+
           |
          SchemaDNAAlphabet


Alphabet of a simple Schema for DNA sequences.

This defines a simple alphabet for DNA sequences that has a single character which can match any other character.

o G,A,T,C - The standard unambiguous DNA alphabet.

o * - Any letter
Method Summary
    Inherited from Alphabet
  __repr__(self)
  contains(self, other)

Class Variable Summary
dict alphabet_matches = {'A': 'A', 'C': 'C', '*': 'GATC', 'T'...
list letters = ['G', 'A', 'T', 'C', '*']
    Inherited from Alphabet
NoneType size = None                                                                  

Class Variable Details

alphabet_matches

Type:
dict
Value:
{'A': 'A', 'C': 'C', '*': 'GATC', 'T': 'T', 'G': 'G'}                  

letters

Type:
list
Value:
['G', 'A', 'T', 'C', '*']                                              

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