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Package Bio :: Package Application |
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Classes | |
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AbstractCommandline |
Generic interface for running applications from biopython. |
ApplicationResult |
Make results of a program available through a standard interface. |
_AbstractParameter |
A class to hold information about a parameter for a commandline. |
_Argument |
Represent an argument on a commandline. |
_Option |
Represent an option that can be set for a program. |
Function Summary | |
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Run an application with the given commandline. | |
Make sure that a passed filename exists. |
Function Details |
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generic_run(commandline)Run an application with the given commandline. This expects a pre-built commandline that derives from AbstractCommandline, and returns a ApplicationResult object to get results from a program, along with handles of the standard output and standard error. |
_file_exists(self, filename)Make sure that a passed filename exists. |
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