Package Bio :: Package Compass
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Package Bio.Compass

Code to deal with COMPASS output, a program for profile/profile comparison.

Compass is described in:

Sadreyev R, Grishin N. COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance. J Mol Biol. 2003 Feb 7;326(1):317-36.

Tested with COMPASS 1.24.

Classes: Record One result of a compass file _Scanner Scan compass results _Consumer Consume scanner events RecordParser Parse one compass record Iterator Iterate through a number of compass records
Classes
Iterator Iterate through a file of compass results
Record Hold information from one compass hit.
RecordParser Parses compass results into a Record object.

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