bcftools-1.9-3.el8 RPM for aarch64

From EPEL 8 for aarch64 / Packages / b

BCFtools is a set of utilities that manipulate genomic variant calls in the
Variant Call Format (VCF) and its binary counterpart (BCF). All commands work
transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.

(This BCFtools includes the polysomy subcommand, which is implemented using
the GNU Scientific Library. Hence this package is licensed according to the
GNU General Public License, rather than the MIT license used when BCFtools
is built without the polysomy subcommand.)

Provides

• bcftools
• bcftools(aarch-64)

Requires

• /usr/bin/perl
• /usr/libexec/platform-python
• ld-linux-aarch64.so.1()(64bit)
• ld-linux-aarch64.so.1(GLIBC_2.17)(64bit)
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.17)(64bit)
• libcrypt.so.1()(64bit)
• libdl.so.2()(64bit)
• libdl.so.2(GLIBC_2.17)(64bit)
• libgsl.so.23()(64bit)
• libgslcblas.so.0()(64bit)
• libhts.so.2()(64bit)
• libm.so.6()(64bit)
• libm.so.6(GLIBC_2.17)(64bit)
• libm.so.6(GLIBC_2.23)(64bit)
• libperl.so.5.26()(64bit)
• libpthread.so.0()(64bit)
• libpthread.so.0(GLIBC_2.17)(64bit)
• libresolv.so.2()(64bit)
• libutil.so.1()(64bit)
• libz.so.1()(64bit)
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsXz) <= 5.2-1
• rtld(GNU_HASH)

License

GPLv3+

Changelog

* Tue Mar 17 2020 Jun Aruga <jaruga@redhat.com> - 1.9-3
  - Fix the build failure adding perl(FindBin) build dependency.
* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.9-2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
* Tue Nov 19 2019 Jun Aruga <jaruga@redhat.com> - 1.9-1
  - Exclude a CPU architecture s390x.
  - Add Conflicts tag for samtools < 1.0.
  - Align the field delimiter as 1 space.
  - Use additional RPM macros for Source0.
  - Add a logic to check if bcftools is built with system htslib.
  - Update comments for license.
* Wed Nov 06 2019 John Marshall <jmarshall@users.sourceforge.net> - 1.9-1
  - New spec file for bcftools, now separate from samtools (#1767792).
  - Backported Python 3 and configure patches from later upstream development.

Files

/usr/bin/bcftools
/usr/bin/color-chrs.pl
/usr/bin/guess-ploidy.py
/usr/bin/plot-roh.py
/usr/bin/plot-vcfstats
/usr/bin/run-roh.pl
/usr/bin/vcfutils.pl
/usr/lib/.build-id
/usr/lib/.build-id/1a
/usr/lib/.build-id/1a/bee8699de0b8a065575602f86e91db136e3102
/usr/lib/.build-id/30
/usr/lib/.build-id/30/cc02e9182b3064214d8b67b7570a1dc59bf6ae
/usr/lib/.build-id/35
/usr/lib/.build-id/35/c27d4b15dc31c1baacbcbbd8904a61fffae062
/usr/lib/.build-id/3d
/usr/lib/.build-id/3d/1062f1dc6223d3a2d73ba1ae151592292cc6a0
/usr/lib/.build-id/42
/usr/lib/.build-id/42/87345046b43c86ced3848970427d82d0f9643d
/usr/lib/.build-id/4e
/usr/lib/.build-id/4e/327e3e809a1dcaf152fef595ac49112ae8c7ad
/usr/lib/.build-id/63
/usr/lib/.build-id/63/2bb7cedd12a40157ae73f756de36f6a0431926
/usr/lib/.build-id/67
/usr/lib/.build-id/67/4507500f7344f63bf8666f64af4fd6a2d45e34
/usr/lib/.build-id/67/619a469bf8f188bdc767602963cf6083b9eaff
/usr/lib/.build-id/7c
/usr/lib/.build-id/7c/36dd42ebd9e9bd3022c09cbaab575a4e437d4f
/usr/lib/.build-id/86
/usr/lib/.build-id/86/caf8c88cb7d1dc250980bd6f7c1a3c77b7aee5
/usr/lib/.build-id/87
/usr/lib/.build-id/87/d716718906d775acfb451e88fd249dd9aa5f9b
/usr/lib/.build-id/8a
/usr/lib/.build-id/8a/6ab4bc262e5966fb79c206a4dd8079d0300a88
/usr/lib/.build-id/98
/usr/lib/.build-id/98/4343c35f6bd833a37b83c903374666917d072d
/usr/lib/.build-id/99
/usr/lib/.build-id/99/590a40a51e90077136554525a0022e83f82db4
/usr/lib/.build-id/9e
/usr/lib/.build-id/9e/46b81f0b695980b40695e5b48e82f4c4a95f65
/usr/lib/.build-id/a1
/usr/lib/.build-id/a1/73a24819b57b93b0ef2058f8bb9ee45621aacc
/usr/lib/.build-id/a4
/usr/lib/.build-id/a4/a1c8d3c6bfc1d1175af7ff3137acf55bb7bb0d
/usr/lib/.build-id/b1
/usr/lib/.build-id/b1/32a3dc093c57976da79dab89f859953ef35934
/usr/lib/.build-id/bb
/usr/lib/.build-id/bb/3c14ed7265c9d0edd02585e8915ef3e3312d1c
/usr/lib/.build-id/c1
/usr/lib/.build-id/c1/d03038340236d73516c2e378565c0d50ca1d4a
/usr/lib/.build-id/d1
/usr/lib/.build-id/d1/0227322b5355876f50384bfb37131a50d2de71
/usr/lib/.build-id/d7
/usr/lib/.build-id/d7/7e5c801a637a759c5a59218e9f3b53ca0cfbb4
/usr/lib/.build-id/ee
/usr/lib/.build-id/ee/1fddd21525af11456917ecb9be670c2fdcd657
/usr/lib/.build-id/f1
/usr/lib/.build-id/f1/cf46ec8965a6c73874b4bb11b1350923c6eb78
/usr/lib/.build-id/f4
/usr/lib/.build-id/f4/9d01f9a85535f61dd4c2f019cc0c7e8896a93f
/usr/lib/.build-id/f6
/usr/lib/.build-id/f6/fcfee86a2dc1cee051478abf320ab1b2a2d71e
/usr/lib/.build-id/f8
/usr/lib/.build-id/f8/fa91a64627e332037b3e3240109859f0f08244
/usr/lib/.build-id/fc
/usr/lib/.build-id/fc/5a4634cfd7ca5d367d6f9a76e2fc107cf95a93
/usr/libexec/bcftools
/usr/libexec/bcftools/GTisec.so
/usr/libexec/bcftools/GTsubset.so
/usr/libexec/bcftools/ad-bias.so
/usr/libexec/bcftools/af-dist.so
/usr/libexec/bcftools/check-ploidy.so
/usr/libexec/bcftools/check-sparsity.so
/usr/libexec/bcftools/color-chrs.so
/usr/libexec/bcftools/contrast.so
/usr/libexec/bcftools/counts.so
/usr/libexec/bcftools/dosage.so
/usr/libexec/bcftools/fill-AN-AC.so
/usr/libexec/bcftools/fill-from-fasta.so
/usr/libexec/bcftools/fill-tags.so
/usr/libexec/bcftools/fixploidy.so
/usr/libexec/bcftools/fixref.so
/usr/libexec/bcftools/frameshifts.so
/usr/libexec/bcftools/guess-ploidy.so
/usr/libexec/bcftools/impute-info.so
/usr/libexec/bcftools/isecGT.so
/usr/libexec/bcftools/mendelian.so
/usr/libexec/bcftools/missing2ref.so
/usr/libexec/bcftools/prune.so
/usr/libexec/bcftools/setGT.so
/usr/libexec/bcftools/smpl-stats.so
/usr/libexec/bcftools/split.so
/usr/libexec/bcftools/tag2tag.so
/usr/libexec/bcftools/trio-stats.so
/usr/libexec/bcftools/trio-switch-rate.so
/usr/share/doc/bcftools
/usr/share/doc/bcftools/AUTHORS
/usr/share/doc/bcftools/NEWS
/usr/share/licenses/bcftools
/usr/share/licenses/bcftools/LICENSE
/usr/share/man/man1/bcftools.1.gz

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Fabrice Bellet, Thu Jan 23 04:11:35 2025