bowtie-1.2.3-2.el8 RPM for aarch64

From EPEL 8 for aarch64 / Packages / b

Bowtie, an ultrafast, memory-efficient short read aligner for short
DNA sequences (reads) from next-gen sequencers. Please cite: Langmead
B, et al. Ultrafast and memory-efficient alignment of short DNA
sequences to the human genome. Genome Biol 10:R25.

Provides

• bowtie
• bowtie(aarch-64)
• bundled(seqan)
• bundled(tiny-thread)

Requires

• /bin/bash
• /bin/sh
• /usr/bin/perl
• /usr/libexec/platform-python
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.17)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit)
• libm.so.6()(64bit)
• libm.so.6(GLIBC_2.17)(64bit)
• libm.so.6(GLIBC_2.27)(64bit)
• libpthread.so.0()(64bit)
• libpthread.so.0(GLIBC_2.17)(64bit)
• libstdc++.so.6()(64bit)
• libstdc++.so.6(CXXABI_1.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.8)(64bit)
• libstdc++.so.6(CXXABI_1.3.9)(64bit)
• libstdc++.so.6(GLIBCXX_3.4)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
• libz.so.1()(64bit)
• libz.so.1(ZLIB_1.2.3.3)(64bit)
• libz.so.1(ZLIB_1.2.3.5)(64bit)
• python3
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsXz) <= 5.2-1

License

Artistic 2.0 and zlib and GPLv3 and LGPLv3+

Changelog

* Tue Mar 17 2020 Jun Aruga <jaruga@redhat.com> - 1.2.3-2
  - Fix the build failure adding perl(FindBin) and perl(lib) build dependencies.
* Fri Feb 28 2020 Jun Aruga <jaruga@redhat.com> - 1.2.3-1
  - Update to upstream release 1.2.3
* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.1-14
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.1-13
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.1-12
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.1-11
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.1-10
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.1-9
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.1-8
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.1-7
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.1-6
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
* Wed Jun 17 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.1-5
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
* Sat May 02 2015 Kalev Lember <kalevlember@gmail.com> - 1.0.1-4
  - Rebuilt for GCC 5 C++11 ABI change
* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.1-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
* Sat Jun 07 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.1-2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
* Mon Jun 02 2014 Adam Huffman <bloch@verdurin.com> - 1.0.1-1
  - Update to upstream release 1.0.1
* Wed Dec 04 2013 Adam Huffman <bloch@verdurin.com> - 1.0.0-2
  - Correct licence information (thanks to Dave Love)
  - Reorganise documentation (thanks to Dave Love)
  - Fix compilation on ARM
* Wed Aug 07 2013 Adam Huffman <bloch@verdurin.com> - 1.0.0-1
  - Update to stable upstream release 1.0.0
  - Remove unnecessary script patch
* Sat Aug 03 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.12.7-8
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
* Wed Jul 17 2013 Petr Pisar <ppisar@redhat.com> - 0.12.7-7
  - Perl 5.18 rebuild
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.12.7-6
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.12.7-5
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
* Tue Feb 28 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.12.7-4
  - Rebuilt for c++ ABI breakage
* Mon Jan 09 2012 Adam Huffman <verdurin@fedoraproject.org> - 0.12.7-3
  - add patch to fix compilation with GCC 4.7
* Mon Jun 27 2011 Adam Huffman <bloch@verdurin.com> - 0.12.7-2
  - add missing doc/ 
  - add patch to fix Perl script without shebang
* Mon Sep 13 2010 Adam Huffman <bloch@verdurin.com> - 0.12.7-1
  - new upstream release 0.12.7
  - changelog at http://bowtie-bio.sourceforge.net/index.shtml
* Tue Aug 31 2010 Adam Huffman <bloch@verdurin.com> - 0.12.5-3
  - really fix compilation flags
* Wed Aug 25 2010 Adam Huffman <bloch@verdurin.com> - 0.12.5-2
  - fix compilation flags
* Mon Aug 02 2010 Adam Huffman <bloch@verdurin.com> - 0.12.5-1
  - initial version

Files

/usr/bin/bowtie
/usr/bin/bowtie-align-l
/usr/bin/bowtie-align-l-debug
/usr/bin/bowtie-align-s
/usr/bin/bowtie-align-s-debug
/usr/bin/bowtie-build
/usr/bin/bowtie-build-l
/usr/bin/bowtie-build-l-debug
/usr/bin/bowtie-build-s
/usr/bin/bowtie-build-s-debug
/usr/bin/bowtie-inspect
/usr/bin/bowtie-inspect-l
/usr/bin/bowtie-inspect-l-debug
/usr/bin/bowtie-inspect-s
/usr/bin/bowtie-inspect-s-debug
/usr/lib/.build-id
/usr/lib/.build-id/19
/usr/lib/.build-id/19/2e8cb5474ba3f71260d5046485dca1ba813bc7
/usr/lib/.build-id/1a
/usr/lib/.build-id/1a/ab893457898dfed23c78e22397e0cc40b9a2f0
/usr/lib/.build-id/44
/usr/lib/.build-id/44/be287eedb053b7edda5313175498eae80a7278
/usr/lib/.build-id/59
/usr/lib/.build-id/59/f7053c16021275585da59d3587bf6bf450d92b
/usr/lib/.build-id/6e
/usr/lib/.build-id/6e/a1bb7aec56bcac9da3721dbbadd19dc4d7b79a
/usr/lib/.build-id/a2
/usr/lib/.build-id/a2/a0614569d52c9bf826d5976b11a3c19c3dad51
/usr/lib/.build-id/c3
/usr/lib/.build-id/c3/221693eb9f6824bcca734c47ddd8cd5fe17e2a
/usr/lib/.build-id/c8
/usr/lib/.build-id/c8/676a354126ede1a92a1b6a88d88907297fff24
/usr/lib/.build-id/d2
/usr/lib/.build-id/d2/fcc71aba48a1f3d2caaf6823e533f24a5f2d04
/usr/lib/.build-id/dd
/usr/lib/.build-id/dd/62403510f52f36aa369eb96a87689a67852514
/usr/lib/.build-id/e2
/usr/lib/.build-id/e2/e7619e957889b35076670263ae263dffd27802
/usr/lib/.build-id/e6
/usr/lib/.build-id/e6/ca290526d77c465f9a66eb06b23f0f75210b06
/usr/share/bowtie
/usr/share/bowtie/genomes
/usr/share/bowtie/genomes/NC_008253.fna
/usr/share/bowtie/indexes
/usr/share/bowtie/indexes/e_coli.1.ebwt
/usr/share/bowtie/indexes/e_coli.2.ebwt
/usr/share/bowtie/indexes/e_coli.3.ebwt
/usr/share/bowtie/indexes/e_coli.4.ebwt
/usr/share/bowtie/indexes/e_coli.README
/usr/share/bowtie/indexes/e_coli.rev.1.ebwt
/usr/share/bowtie/indexes/e_coli.rev.2.ebwt
/usr/share/bowtie/reads
/usr/share/bowtie/reads/e_coli_1000.fa
/usr/share/bowtie/reads/e_coli_1000.fq
/usr/share/bowtie/reads/e_coli_1000.raw
/usr/share/bowtie/reads/e_coli_10000snp.fa
/usr/share/bowtie/reads/e_coli_10000snp.fq
/usr/share/bowtie/reads/e_coli_1000_1.fa
/usr/share/bowtie/reads/e_coli_1000_1.fq
/usr/share/bowtie/reads/e_coli_1000_2.fa
/usr/share/bowtie/reads/e_coli_1000_2.fq
/usr/share/bowtie/reads/e_coli_1000_interleaved.fq
/usr/share/bowtie/scripts
/usr/share/bowtie/scripts/best_verify.pl
/usr/share/bowtie/scripts/bowtie-hbb.sh
/usr/share/bowtie/scripts/bs_mapability.pl
/usr/share/bowtie/scripts/build_test.sh
/usr/share/bowtie/scripts/colorize_fasta.pl
/usr/share/bowtie/scripts/colorize_fastq.pl
/usr/share/bowtie/scripts/convert_quals.pl
/usr/share/bowtie/scripts/fastq_to_tabbed.pl
/usr/share/bowtie/scripts/gen_2b_occ_lookup.pl
/usr/share/bowtie/scripts/gen_dnamasks2colormask.pl
/usr/share/bowtie/scripts/gen_occ_lookup.pl
/usr/share/bowtie/scripts/gen_solqual_lookup.pl
/usr/share/bowtie/scripts/infer_fraglen.pl
/usr/share/bowtie/scripts/make_a_thaliana_tair.sh
/usr/share/bowtie/scripts/make_b_taurus_UMD3.sh
/usr/share/bowtie/scripts/make_c_elegans.sh
/usr/share/bowtie/scripts/make_canFam2.sh
/usr/share/bowtie/scripts/make_d_melanogaster.sh
/usr/share/bowtie/scripts/make_e_coli.sh
/usr/share/bowtie/scripts/make_galGal3.sh
/usr/share/bowtie/scripts/make_h_sapiens_ncbi36.sh
/usr/share/bowtie/scripts/make_h_sapiens_ncbi37.sh
/usr/share/bowtie/scripts/make_hg18.sh
/usr/share/bowtie/scripts/make_hg19.sh
/usr/share/bowtie/scripts/make_m_musculus_ncbi37.sh
/usr/share/bowtie/scripts/make_mm8.sh
/usr/share/bowtie/scripts/make_mm9.sh
/usr/share/bowtie/scripts/make_rn4.sh
/usr/share/bowtie/scripts/make_s_cerevisiae.sh
/usr/share/bowtie/scripts/mapability.pl
/usr/share/bowtie/scripts/pe_verify.pl
/usr/share/bowtie/scripts/reconcile_alignments.pl
/usr/share/bowtie/scripts/reconcile_alignments_pe.pl
/usr/share/bowtie/scripts/run-hbb.sh
/usr/share/doc/bowtie
/usr/share/doc/bowtie/AUTHORS
/usr/share/doc/bowtie/MANUAL
/usr/share/doc/bowtie/NEWS
/usr/share/doc/bowtie/TUTORIAL
/usr/share/doc/bowtie/VERSION
/usr/share/doc/bowtie/manual.html
/usr/share/doc/bowtie/style.css
/usr/share/licenses/bowtie
/usr/share/licenses/bowtie/GPL.txt
/usr/share/licenses/bowtie/LGPL.txt
/usr/share/licenses/bowtie/LICENSE

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Fabrice Bellet, Sun Jan 12 11:54:50 2025