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| Name: samtools | Distribution: Fedora Project |
| Version: 1.9 | Vendor: Fedora Project |
| Release: 3.el8 | Build date: Tue May 5 22:23:02 2020 |
| Group: Unspecified | Build host: buildvm-06.phx2.fedoraproject.org |
| Size: 1111305 | Source RPM: samtools-1.9-3.el8.src.rpm |
| Packager: Fedora Project | |
| Url: http://www.htslib.org/ | |
| Summary: Tools for nucleotide sequence alignments in the SAM format | |
SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
MIT
* Tue Mar 17 2020 Jun Aruga <jaruga@redhat.com> - 1.9-3 - Fix the build failure adding perl(FindBin) and perl(lib) build dependencies. * Thu Jan 30 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.9-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Mon Nov 04 2019 Jun Aruga <jaruga@redhat.com> - 1.9-1 - Update to 1.9 - Remove devel and libs sub packges, as "make dylib" was removed. * Fri Nov 01 2019 Jun Aruga <jaruga@redhat.com> - 0.1.19-20 - Remove Python 2 dependency (rhbz#1738176). * Fri Jul 26 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.19-19 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Wed Jul 10 2019 Petr Pisar <ppisar@redhat.com> - 0.1.19-18 - varfilter.py is a Python 2 code (bug #1675976) * Sat Feb 02 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.19-17 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Wed Jul 25 2018 Adam Huffman <bloch@verdurin.com> - 0.1.19-16 - Add BR for python2 * Fri Jul 20 2018 Adam Huffman <bloch@verdurin.com> - 0.1.19-15 - Add BR for gcc * Sat Jul 14 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.19-14 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Fri Feb 09 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.19-13 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Thu Aug 03 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.19-12 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild * Thu Jul 27 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.19-11 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Sat Feb 11 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.19-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild * Thu Feb 04 2016 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.19-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Fri Jun 19 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.19-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Fri May 29 2015 Tom Callaway <spot@fedoraproject.org> - 0.1.19-7 - add fixes from Rsamtools * Mon Aug 18 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.19-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild * Mon Jun 09 2014 Tom Callaway <spot@fedoraproject.org> - 0.1.19-5 - add faidx_fetch_seq2 function from rsamtools * Sun Jun 08 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.19-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild * Sun Aug 04 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.19-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Wed Jul 17 2013 Petr Pisar <ppisar@redhat.com> - 0.1.19-2 - Perl 5.18 rebuild * Thu Apr 11 2013 Tom Callaway <spot@fedoraproject.org> - 0.1.19-1 - update to 0.1.19 * Thu Feb 14 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.18-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Sat Jul 21 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.18-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Sat Jan 14 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.18-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Wed Oct 26 2011 Adam Huffman <verdurin@fedoraproject.org> - 0.1.18-2 - make sure new seqtk tool included * Tue Sep 06 2011 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.18-1 - Updated to 0.1.18 * Tue May 10 2011 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.16-1 - Updated to 0.1.16 * Mon Apr 11 2011 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.15-1 - Updated to 0.1.15 * Wed Mar 23 2011 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.14-1 - Updated to 0.1.14 - Build shared library instead of static * Wed Feb 09 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.12a-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Mon Dec 06 2010 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.12a-2 - Fixed header files directory ownership - Added missing header files * Mon Dec 06 2010 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.12a-1 - Updated to 0.1.12a * Tue Nov 23 2010 Adam Huffman <bloch@verdurin.com> - 0.1.8-4 - cleanup man page handling * Sun Oct 10 2010 Adam Huffman <bloch@verdurin.com> - 0.1.8-4 - fix attributes for devel subpackage - fix library location * Sun Sep 26 2010 Adam Huffman <bloch@verdurin.com> - 0.1.8-3 - put headers and library in standard locations * Mon Sep 06 2010 Adam Huffman <bloch@verdurin.com> - 0.1.8-2 - merge Rasmus' latest changes (0.1.8 update) - include bam.h and libbam.a for Bio-SamTools compilation - move bam.h and libbam.a to single directory - put bgzf.h, khash.h and faidx.h in the same place - add -fPIC to CFLAGS to make Bio-SamTools happy - add virtual Provide as per guidelines * Tue Aug 17 2010 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.8-1 - Updated to 0.1.8. * Mon Nov 30 2009 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.7a-1 - Updated to 0.1.7a. * Sun Jul 26 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.5c-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild * Sun Jul 12 2009 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.5c-3 - Specfile cleanup. * Sat Jul 11 2009 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.5c-2 - Fixed manpage location. - Make sure optflags is passed to the makefiles. * Sat Jul 11 2009 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.5c-1 - Initial build.
/usr/bin/ace2sam /usr/bin/blast2sam.pl /usr/bin/bowtie2sam.pl /usr/bin/export2sam.pl /usr/bin/interpolate_sam.pl /usr/bin/maq2sam-long /usr/bin/maq2sam-short /usr/bin/md5fa /usr/bin/md5sum-lite /usr/bin/novo2sam.pl /usr/bin/plot-bamstats /usr/bin/psl2sam.pl /usr/bin/sam2vcf.pl /usr/bin/samtools /usr/bin/samtools.pl /usr/bin/seq_cache_populate.pl /usr/bin/soap2sam.pl /usr/bin/wgsim /usr/bin/wgsim_eval.pl /usr/bin/zoom2sam.pl /usr/lib/.build-id /usr/lib/.build-id/05 /usr/lib/.build-id/05/123b644b7f2f29bcd9049a5ee68cc0488367a7 /usr/lib/.build-id/07 /usr/lib/.build-id/07/db18c93111c1a79036f992b1130e38b9164867 /usr/lib/.build-id/2e /usr/lib/.build-id/2e/881228793e2045d460de34e2a649bf4fb7ffaf /usr/lib/.build-id/6c /usr/lib/.build-id/6c/cc0b101c678776d93a1e7a5424aaa8425006aa /usr/lib/.build-id/80 /usr/lib/.build-id/80/8e324e48b6869bd6e03399650243e56af2fbc2 /usr/lib/.build-id/cd /usr/lib/.build-id/cd/15f6598518386f71702f55e97dc66344aacdab /usr/lib/.build-id/f9 /usr/lib/.build-id/f9/41864a8557ca15b8b14ec264ecf885beccf5a1 /usr/share/doc/samtools /usr/share/doc/samtools/AUTHORS /usr/share/doc/samtools/ChangeLog.old /usr/share/doc/samtools/NEWS /usr/share/doc/samtools/examples /usr/share/doc/samtools/examples/00README.txt /usr/share/doc/samtools/examples/ex1.fa /usr/share/doc/samtools/examples/ex1.sam.gz /usr/share/doc/samtools/examples/toy.fa /usr/share/doc/samtools/examples/toy.sam /usr/share/licenses/samtools /usr/share/licenses/samtools/LICENSE /usr/share/man/man1/samtools.1.gz /usr/share/man/man1/wgsim.1.gz
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