openms-3.0.0-2.fc39 RPM for x86_64

From Fedora 39 for x86_64 / o

OpenMS is a C++ library for LC-MS data management and analyses.
It offers an infrastructure for the rapid development of mass spectrometry
related software. OpenMS is free software available under the three clause BSD
license and runs under Windows, MacOSX and Linux.

It comes with a vast variety of pre-built and ready-to-use tools for proteomics
and metabolomics data analysis (TOPPTools) and
powerful 2D and 3D visualization(TOPPView).

OpenMS offers analyses for various quantitation protocols,
including label-free quantitation, SILAC, iTRAQ, SRM, SWATH, etc.

It provides built-in algorithms for de-novo identification and database search,
as well as adapters to other state-of-the art tools like XTandem, Mascot,
OMSSA, etc.
It supports easy integration of OpenMS built tools into workflow engines like
Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept and
a unified parameter handling via a 'common tool description' (CTD) scheme.

The OpenMS Proteomics Pipeline is a pipeline for
the analysis of HPLC-MS data.
It consists of several small applications that
can be chained to create analysis pipelines tailored
for a specific problem.

The TOPP tools are divided into several subgroups:

 - Graphical Tools
 - File Handling
 - Signal Processing and Preprocessing
 - Quantitation
 - Map Alignment
 - Protein/Peptide Identification
 - Protein/Peptide Processing
 - Targeted Experiments
 - Peptide Property Prediction
 - Misc

Provides

• openms
• application()
• application(TOPPAS.desktop)
• application(TOPPView.desktop)
• application(inifileeditor.desktop)
• cmake(OpenMS)
• cmake(openms)
• metainfo()
• metainfo(TOPPAS.appdata.xml)
• metainfo(TOPPView.appdata.xml)
• openms(x86-64)

Requires

• R-core(x86-64)
• cmake-filesystem(x86-64)
• ld-linux-x86-64.so.2()(64bit)
• ld-linux-x86-64.so.2(GLIBC_2.3)(64bit)
• libCbc.so.3()(64bit)
• libCgl.so.1()(64bit)
• libCoinUtils.so.3()(64bit)
• libOsiClp.so.1()(64bit)
• libQt5Core.so.5()(64bit)
• libQt5Core.so.5(Qt_5)(64bit)
• libQt5Core.so.5(Qt_5.15)(64bit)
• libQt5Gui.so.5()(64bit)
• libQt5Gui.so.5(Qt_5)(64bit)
• libQt5Network.so.5()(64bit)
• libQt5Network.so.5(Qt_5)(64bit)
• libQt5Svg.so.5()(64bit)
• libQt5Svg.so.5(Qt_5)(64bit)
• libQt5WebChannel.so.5()(64bit)
• libQt5WebChannel.so.5(Qt_5)(64bit)
• libQt5WebEngineWidgets.so.5()(64bit)
• libQt5WebEngineWidgets.so.5(Qt_5)(64bit)
• libQt5Widgets.so.5()(64bit)
• libQt5Widgets.so.5(Qt_5)(64bit)
• libbz2.so.1()(64bit)
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.14)(64bit)
• libc.so.6(GLIBC_2.2.5)(64bit)
• libc.so.6(GLIBC_2.28)(64bit)
• libc.so.6(GLIBC_2.3.4)(64bit)
• libc.so.6(GLIBC_2.32)(64bit)
• libc.so.6(GLIBC_2.33)(64bit)
• libc.so.6(GLIBC_2.34)(64bit)
• libc.so.6(GLIBC_2.38)(64bit)
• libc.so.6(GLIBC_2.4)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit)
• libgcc_s.so.1(GCC_3.4)(64bit)
• libgomp.so.1()(64bit)
• libgomp.so.1(GOMP_1.0)(64bit)
• libgomp.so.1(GOMP_4.0)(64bit)
• libgomp.so.1(GOMP_4.5)(64bit)
• libgomp.so.1(OMP_1.0)(64bit)
• libgomp.so.1(OMP_3.0)(64bit)
• libm.so.6()(64bit)
• libm.so.6(GLIBC_2.2.5)(64bit)
• libm.so.6(GLIBC_2.23)(64bit)
• libm.so.6(GLIBC_2.27)(64bit)
• libm.so.6(GLIBC_2.29)(64bit)
• libm.so.6(GLIBC_2.38)(64bit)
• libstdc++.so.6()(64bit)
• libstdc++.so.6(CXXABI_1.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.11)(64bit)
• libstdc++.so.6(CXXABI_1.3.13)(64bit)
• libstdc++.so.6(CXXABI_1.3.2)(64bit)
• libstdc++.so.6(CXXABI_1.3.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.5)(64bit)
• libstdc++.so.6(CXXABI_1.3.8)(64bit)
• libstdc++.so.6(CXXABI_1.3.9)(64bit)
• libstdc++.so.6(GLIBCXX_3.4)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.14)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.15)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.18)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.19)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.22)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.26)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.29)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.30)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.32)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
• libsvm.so.3()(64bit)
• libxerces-c-3.2.so()(64bit)
• libz.so.1()(64bit)
• openms-data(x86-64) = 3.0.0-2.fc39
• percolator(x86-64)
• qt5-qtdeclarative-devel(x86-64)
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1
• rtld(GNU_HASH)

License

BSD

Changelog

* Mon Aug 14 2023 Antonio Trande <sagitter@fedoraproject.org> - 3.0.0-2
  - Unbundle Qt5QuickWidgets libraries (RHBZ#2231587)
* Mon Jul 24 2023 Antonio Trande <sagitter@fedoraproject.org> - 3.0.0-1
  - Release 3.0.0
  - Set _smp_ncpus_max equal to 2 for all architectures
  - Disable LTO flags
* Thu Jul 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.0-0.2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Mon Jul 03 2023 Antonio Trande <sagitter@fedoraproject.org> - 3.0.0-0.1
  - Pre-release 3.0.0
* Wed Feb 01 2023 Antonio Trande <sagitter@fedoraproject.org> - 2.8.0-0.5
  - Fixed for GCC-13
* Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.8.0-0.4
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Thu Aug 18 2022 Jerry James <loganjerry@gmail.com> - 2.8.0-0.3
  - Rebuild for libsvm 3.3
* Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.8.0-0.2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Sat Mar 05 2022 Antonio Trande <sagitter@fedoraproject.org> - 2.8.0-0.1
  - Pre-release 2.8.0
  - Patched for GCC-12
  - ExclusiveArch qt5_qtwebengine_arches
* Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.7.0-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Sun Nov 28 2021 Antonio Trande <sagitter@fedoraproject.org> - 2.7.0-2
  - Rebuild for hdf5 1.12.1
  - Disable Python binding
* Sat Sep 18 2021 Antonio Trande <sagitter@fedoraproject.org> - 2.7.0-1
  - Release 2.7.0
  - Tests disabled
  - Use bundled seqan (optimized for OpenMS)

Files

/usr/bin/BaselineFilter
/usr/bin/CompNovo
/usr/bin/CompNovoCID
/usr/bin/ConsensusID
/usr/bin/ConsensusMapNormalizer
/usr/bin/DTAExtractor
/usr/bin/DatabaseFilter
/usr/bin/DatabaseSuitability
/usr/bin/Decharger
/usr/bin/EICExtractor
/usr/bin/ExecutePipeline
/usr/bin/FalseDiscoveryRate
/usr/bin/FeatureFinderCentroided
/usr/bin/FeatureFinderIdentification
/usr/bin/FeatureFinderIsotopeWavelet
/usr/bin/FeatureFinderMRM
/usr/bin/FeatureFinderMetabo
/usr/bin/FeatureFinderMultiplex
/usr/bin/FeatureLinkerLabeled
/usr/bin/FeatureLinkerUnlabeled
/usr/bin/FeatureLinkerUnlabeledKD
/usr/bin/FeatureLinkerUnlabeledQT
/usr/bin/FidoAdapter
/usr/bin/FileConverter
/usr/bin/FileInfo
/usr/bin/FileMerger
/usr/bin/GenericWrapper
/usr/bin/HighResPrecursorMassCorrector
/usr/bin/IDConflictResolver
/usr/bin/IDFileConverter
/usr/bin/IDFilter
/usr/bin/IDMapper
/usr/bin/IDMerger
/usr/bin/IDPosteriorErrorProbability
/usr/bin/IDRTCalibration
/usr/bin/IDRipper
/usr/bin/IDScoreSwitcher
/usr/bin/INIFileEditor
/usr/bin/InclusionExclusionListCreator
/usr/bin/InternalCalibration
/usr/bin/IsobaricAnalyzer
/usr/bin/LuciphorAdapter
/usr/bin/MRMMapper
/usr/bin/MRMTransitionGroupPicker
/usr/bin/MSGFPlusAdapter
/usr/bin/MapAlignerIdentification
/usr/bin/MapAlignerPoseClustering
/usr/bin/MapAlignerSpectrum
/usr/bin/MapNormalizer
/usr/bin/MapRTTransformer
/usr/bin/MapStatistics
/usr/bin/MascotAdapter
/usr/bin/MascotAdapterOnline
/usr/bin/MassTraceExtractor
/usr/bin/MetaProSIP
/usr/bin/MetaboliteSpectralMatcher
/usr/bin/MzMLSplitter
/usr/bin/MzTabExporter
/usr/bin/NoiseFilterGaussian
/usr/bin/NoiseFilterSGolay
/usr/bin/OpenSwathAnalyzer
/usr/bin/OpenSwathAssayGenerator
/usr/bin/OpenSwathChromatogramExtractor
/usr/bin/OpenSwathConfidenceScoring
/usr/bin/OpenSwathDecoyGenerator
/usr/bin/OpenSwathFeatureXMLToTSV
/usr/bin/OpenSwathRTNormalizer
/usr/bin/OpenSwathWorkflow
/usr/bin/PTModel
/usr/bin/PTPredict
/usr/bin/PeakPickerHiRes
/usr/bin/PeakPickerIterative
/usr/bin/PeakPickerWavelet
/usr/bin/PepNovoAdapter
/usr/bin/PeptideIndexer
/usr/bin/PercolatorAdapter
/usr/bin/PrecursorIonSelector
/usr/bin/PrecursorMassCorrector
/usr/bin/ProteinInference
/usr/bin/ProteinQuantifier
/usr/bin/ProteinResolver
/usr/bin/RNPxlSearch
/usr/bin/RTModel
/usr/bin/RTPredict
/usr/bin/Resampler
/usr/bin/SeedListGenerator
/usr/bin/SimpleSearchEngine
/usr/bin/SpecLibSearcher
/usr/bin/SpectraFilterBernNorm
/usr/bin/SpectraFilterMarkerMower
/usr/bin/SpectraFilterNLargest
/usr/bin/SpectraFilterNormalizer
/usr/bin/SpectraFilterParentPeakMower
/usr/bin/SpectraFilterScaler
/usr/bin/SpectraFilterSqrtMower
/usr/bin/SpectraFilterThresholdMower
/usr/bin/SpectraFilterWindowMower
/usr/bin/SpectraMerger
/usr/bin/StaticModification
/usr/bin/SwathWizard
/usr/bin/TOFCalibration
/usr/bin/TOPPAS
/usr/bin/TOPPView
/usr/bin/TextExporter
/usr/bin/XTandemAdapter
/usr/lib/.build-id
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Fabrice Bellet, Tue Jul 9 21:55:09 2024