python3-steps-openmpi-3.6.0-34.fc40 RPM for x86_64

From Fedora 40 for x86_64 / p

STEPS is a package for exact stochastic simulation of reaction-diffusion
systems in arbitrarily complex 3D geometries. Our core simulation algorithm is
an implementation of Gillespie's SSA, extended to deal with diffusion of
molecules over the elements of a 3D tetrahedral mesh.

While it was mainly developed for simulating detailed models of neuronal
signaling pathways in dendrites and around synapses, it is a general tool and
can be used for studying any biochemical pathway in which spatial gradients and
morphology are thought to play a role.

STEPS also supports accurate and efficient computational of local membrane
potentials on tetrahedral meshes, with the addition of voltage-gated channels
and currents. Tight integration between the reaction-diffusion calculations and
the tetrahedral mesh potentials allows detailed coupling between molecular
activity and local electrical excitability.

We have implemented STEPS as a set of Python modules, which means STEPS users
can use Python scripts to control all aspects of setting up the model,
generating a mesh, controlling the simulation and generating and analyzing
output. The core computational routines are still implemented as C/C++
extension modules for maximal speed of execution.

STEPS 3.0.0 and above provide early parallel solution for stochastic spatial
reaction-diffusion and electric field simulation.

Documentation can be found here:
http://steps.sourceforge.net/manual/manual_index.html

Provides

• python3-steps-openmpi
• bundled(sundials2)
• python-steps-openmpi
• python3-steps-openmpi(x86-64)
• python3.12-steps-openmpi

Requires

• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.14)(64bit)
• libc.so.6(GLIBC_2.2.5)(64bit)
• libc.so.6(GLIBC_2.3.4)(64bit)
• libc.so.6(GLIBC_2.32)(64bit)
• libc.so.6(GLIBC_2.33)(64bit)
• libc.so.6(GLIBC_2.38)(64bit)
• libc.so.6(GLIBC_2.4)(64bit)
• libc.so.6(GLIBC_ABI_DT_RELR)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit)
• libgcc_s.so.1(GCC_3.3.1)(64bit)
• libgomp.so.1()(64bit)
• libgomp.so.1(GOMP_4.0)(64bit)
• libgomp.so.1(OMP_1.0)(64bit)
• libgtest.so.1.14.0()(64bit)
• libgtest_main.so.1.14.0()(64bit)
• libm.so.6()(64bit)
• libm.so.6(GLIBC_2.2.5)(64bit)
• libm.so.6(GLIBC_2.23)(64bit)
• libm.so.6(GLIBC_2.27)(64bit)
• libm.so.6(GLIBC_2.29)(64bit)
• libmpi.so.40()(64bit)(openmpi-x86_64)
• libstdc++.so.6()(64bit)
• libstdc++.so.6(CXXABI_1.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.15)(64bit)
• libstdc++.so.6(CXXABI_1.3.5)(64bit)
• libstdc++.so.6(CXXABI_1.3.9)(64bit)
• libstdc++.so.6(GLIBCXX_3.4)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.14)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.18)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.26)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.29)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.30)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.32)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
• openmpi
• python(abi) = 3.12
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PartialHardlinkSets) <= 4.0.4-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1
• rtld(GNU_HASH)

License

GPLv2

Changelog

* Fri Jan 26 2024 Fedora Release Engineering <releng@fedoraproject.org> - 3.6.0-34
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Mon Jan 22 2024 Fedora Release Engineering <releng@fedoraproject.org> - 3.6.0-33
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Mon Oct 30 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-32
  - Rebuild for gtest 1.14.0
* Sun Oct 29 2023 Orion Poplawski <orion@nwra.com> - 3.6.0-31
  - Rebuild for openmpi 5.0.0, drops C++ API
* Fri Jul 21 2023 Fedora Release Engineering <releng@fedoraproject.org> - 3.6.0-30
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Tue Jun 27 2023 Python Maint <python-maint@redhat.com> - 3.6.0-29
  - Rebuilt for Python 3.12
* Fri Feb 03 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-28
  - Leaf package on ix86: drop ix86 support
* Tue Jan 24 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-27
  - Rebuilt for gtest 1.13.0 (fix RHBZ#2164003)
  - Build with C++14 instead of C++11, since gtest dropped support
  - Add a missing #include directive for GCC 13
* Tue Jan 24 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-26
  - Remove old easylogging++ sources from dist-git
* Fri Jan 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 3.6.0-25
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Thu Sep 08 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-24
  - Tidy up spec file formatting
* Thu Sep 08 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-23
  - Stop numbering patches
* Thu Sep 08 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-22
  - Unbundle easyloggingpp
* Mon Aug 29 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-21
  - Improve treatment of bundled sundials(2)
  - Unbundling currently works up to linking, where there are undefined
    references
* Mon Aug 29 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-20
  - Use more standard macros where we can
* Mon Aug 29 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-19
  - Add -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF to match %%cmake
* Mon Aug 29 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-18
  - Use pkgconf to set unbundled gtest flags
* Mon Aug 29 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-17
  - Simplify patch application
* Mon Aug 29 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-16
  - Better handle bundled easyloggingpp dependency
* Thu Aug 18 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-15
  - Remove unbundled dependencies in %%prep
* Thu Aug 18 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-14
  - Remove workaround for pre-flexiblas Fedora versions
* Thu Aug 18 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-13
  - Reduce macro indirection in the spec file
* Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 3.6.0-12
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Sun Jul 10 2022 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 3.6.0-11
  - fix: correct macro
* Tue Jul 05 2022 Mamoru TASAKA <mtasaka@fedoraproject.org> - 3.6.0-8
  - Add more template funtion to match (bug 2046914)
* Wed Jun 15 2022 Python Maint <python-maint@redhat.com> - 3.6.0-7
  - Rebuilt for Python 3.11

Files

/usr/lib/.build-id
/usr/lib/.build-id/e3
/usr/lib/.build-id/e3/3ab12ad184bb08fca5594cfbec93e243fad227
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/usr/lib64/python3.12/site-packages/openmpi/steps-3.6.0-py3.12.egg-info/SOURCES.txt
/usr/lib64/python3.12/site-packages/openmpi/steps-3.6.0-py3.12.egg-info/dependency_links.txt
/usr/lib64/python3.12/site-packages/openmpi/steps-3.6.0-py3.12.egg-info/top_level.txt
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Fabrice Bellet, Tue Jul 9 23:23:40 2024