| Index | index by Group | index by Distribution | index by Vendor | index by creation date | index by Name | Mirrors | Help | Search |
| Name: R-GenomicAlignments | Distribution: Fedora Project |
| Version: 1.32.1 | Vendor: Fedora Project |
| Release: 9.fc41 | Build date: Wed Jul 17 17:27:34 2024 |
| Group: Unspecified | Build host: buildvm-x86-05.iad2.fedoraproject.org |
| Size: 3270516 | Source RPM: R-GenomicAlignments-1.32.1-9.fc41.src.rpm |
| Packager: Fedora Project | |
| Url: http://www.bioconductor.org/packages/release/bioc/html/GenomicAlignments.html | |
| Summary: Representation and manipulation of short genomic alignments | |
Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.
Artistic-2.0
* Wed Jul 17 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.1-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild * Thu Apr 25 2024 Iñaki Úcar <iucar@fedoraproject.org> - 1.32.1-8 - R-maint-sig mass rebuild * Sat Apr 20 2024 Miroslav Suchý <msuchy@redhat.com> - 1.32.1-7 - convert license to SPDX * Mon Jan 22 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.1-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Fri Jan 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.1-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Fri Apr 21 2023 Iñaki Úcar <iucar@fedoraproject.org> - 1.32.1-3 - R-maint-sig mass rebuild * Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Sat Sep 03 2022 Tom Callaway <spot@fedoraproject.org> - 1.32.1-1 - update to 1.32.1 - rebuild for R 4.2.1 * Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.28.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
/usr/lib/.build-id /usr/lib/.build-id/44 /usr/lib/.build-id/44/4a484c995b281058fe7094322d206c559c1507 /usr/lib64/R/library/GenomicAlignments /usr/lib64/R/library/GenomicAlignments/CITATION /usr/lib64/R/library/GenomicAlignments/DESCRIPTION /usr/lib64/R/library/GenomicAlignments/INDEX /usr/lib64/R/library/GenomicAlignments/Meta /usr/lib64/R/library/GenomicAlignments/Meta/Rd.rds /usr/lib64/R/library/GenomicAlignments/Meta/features.rds /usr/lib64/R/library/GenomicAlignments/Meta/hsearch.rds /usr/lib64/R/library/GenomicAlignments/Meta/links.rds /usr/lib64/R/library/GenomicAlignments/Meta/nsInfo.rds /usr/lib64/R/library/GenomicAlignments/Meta/package.rds /usr/lib64/R/library/GenomicAlignments/Meta/vignette.rds /usr/lib64/R/library/GenomicAlignments/NAMESPACE /usr/lib64/R/library/GenomicAlignments/NEWS /usr/lib64/R/library/GenomicAlignments/R /usr/lib64/R/library/GenomicAlignments/R/GenomicAlignments /usr/lib64/R/library/GenomicAlignments/R/GenomicAlignments.rdb /usr/lib64/R/library/GenomicAlignments/R/GenomicAlignments.rdx /usr/lib64/R/library/GenomicAlignments/doc /usr/lib64/R/library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.R /usr/lib64/R/library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.Rnw /usr/lib64/R/library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.pdf /usr/lib64/R/library/GenomicAlignments/doc/OverlapEncodings.R /usr/lib64/R/library/GenomicAlignments/doc/OverlapEncodings.Rnw /usr/lib64/R/library/GenomicAlignments/doc/OverlapEncodings.pdf /usr/lib64/R/library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.R /usr/lib64/R/library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.Rnw /usr/lib64/R/library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.pdf /usr/lib64/R/library/GenomicAlignments/doc/index.html /usr/lib64/R/library/GenomicAlignments/doc/summarizeOverlaps.R /usr/lib64/R/library/GenomicAlignments/doc/summarizeOverlaps.Rnw /usr/lib64/R/library/GenomicAlignments/doc/summarizeOverlaps.pdf /usr/lib64/R/library/GenomicAlignments/extdata /usr/lib64/R/library/GenomicAlignments/extdata/sm_treated1.bam /usr/lib64/R/library/GenomicAlignments/extdata/sm_untreated1.bam /usr/lib64/R/library/GenomicAlignments/help /usr/lib64/R/library/GenomicAlignments/help/+5B+5B+2CGAlignmentPairs+2CANY+2CANY-method.html /usr/lib64/R/library/GenomicAlignments/help/AnIndex /usr/lib64/R/library/GenomicAlignments/help/CIGAR_OPS.html /usr/lib64/R/library/GenomicAlignments/help/GAlignmentPairs-class.html /usr/lib64/R/library/GenomicAlignments/help/GAlignmentPairs.html /usr/lib64/R/library/GenomicAlignments/help/GAlignments-class.html /usr/lib64/R/library/GenomicAlignments/help/GAlignments.html /usr/lib64/R/library/GenomicAlignments/help/GAlignmentsList-class.html /usr/lib64/R/library/GenomicAlignments/help/GAlignmentsList.html /usr/lib64/R/library/GenomicAlignments/help/GappedReads-class.html /usr/lib64/R/library/GenomicAlignments/help/GappedReads.html /usr/lib64/R/library/GenomicAlignments/help/GenomicAlignments.rdb /usr/lib64/R/library/GenomicAlignments/help/GenomicAlignments.rdx /usr/lib64/R/library/GenomicAlignments/help/IntersectionNotEmpty.html /usr/lib64/R/library/GenomicAlignments/help/IntersectionStrict.html /usr/lib64/R/library/GenomicAlignments/help/Lencoding.html /usr/lib64/R/library/GenomicAlignments/help/Lnjunc.html /usr/lib64/R/library/GenomicAlignments/help/Loffset+2COverlapEncodings-method.html /usr/lib64/R/library/GenomicAlignments/help/Loffset.html /usr/lib64/R/library/GenomicAlignments/help/NATURAL_INTRON_MOTIFS.html /usr/lib64/R/library/GenomicAlignments/help/OverlapEncodings-class.html /usr/lib64/R/library/GenomicAlignments/help/OverlapEncodings.html /usr/lib64/R/library/GenomicAlignments/help/Rencoding.html /usr/lib64/R/library/GenomicAlignments/help/Rnjunc.html /usr/lib64/R/library/GenomicAlignments/help/Roffset+2COverlapEncodings-method.html /usr/lib64/R/library/GenomicAlignments/help/Roffset.html /usr/lib64/R/library/GenomicAlignments/help/Union.html /usr/lib64/R/library/GenomicAlignments/help/aliases.rds /usr/lib64/R/library/GenomicAlignments/help/alphabetFrequencyFromBam.html /usr/lib64/R/library/GenomicAlignments/help/as.data.frame+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/as.data.frame+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/as.data.frame+2COverlapEncodings-method.html /usr/lib64/R/library/GenomicAlignments/help/as.data.frame.OverlapEncodings.html /usr/lib64/R/library/GenomicAlignments/help/bindROWS+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/bindROWS+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/c+2CGappedReads-method.html /usr/lib64/R/library/GenomicAlignments/help/cigar+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/cigar+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/cigar-utils.html /usr/lib64/R/library/GenomicAlignments/help/cigar.html /usr/lib64/R/library/GenomicAlignments/help/cigarNarrow.html /usr/lib64/R/library/GenomicAlignments/help/cigarOpTable.html /usr/lib64/R/library/GenomicAlignments/help/cigarQNarrow.html /usr/lib64/R/library/GenomicAlignments/help/cigarRangesAlongPairwiseSpace.html /usr/lib64/R/library/GenomicAlignments/help/cigarRangesAlongQuerySpace.html /usr/lib64/R/library/GenomicAlignments/help/cigarRangesAlongReferenceSpace.html /usr/lib64/R/library/GenomicAlignments/help/cigarToRleList.html /usr/lib64/R/library/GenomicAlignments/help/cigarWidthAlongPairwiseSpace.html /usr/lib64/R/library/GenomicAlignments/help/cigarWidthAlongQuerySpace.html /usr/lib64/R/library/GenomicAlignments/help/cigarWidthAlongReferenceSpace.html /usr/lib64/R/library/GenomicAlignments/help/class+3AGAlignmentPairs.html /usr/lib64/R/library/GenomicAlignments/help/class+3AGAlignments.html /usr/lib64/R/library/GenomicAlignments/help/class+3AGAlignmentsList.html /usr/lib64/R/library/GenomicAlignments/help/class+3AGappedReads.html /usr/lib64/R/library/GenomicAlignments/help/class+3AOverlapEncodings.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignmentPairs+2CDataFrame-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignmentPairs+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignmentPairs+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignmentPairs+2CGRanges-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignmentPairs+2CGRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignmentPairs+2CIntegerRanges-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignments+2CDataFrame-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignments+2CGRanges-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignments+2CGRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignments+2CIntegerRanges-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignments+2CIntegerRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignmentsList+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignmentsList+2CGRanges-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignmentsList+2CGRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignmentsList+2CIntegerRanges-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGAlignmentsList+2CIntegerRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2CGenomicRanges+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/coerce+2Clist+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/coordinate-mapping-methods.html /usr/lib64/R/library/GenomicAlignments/help/countCompatibleOverlaps.html /usr/lib64/R/library/GenomicAlignments/help/countDumpedAlignments.html /usr/lib64/R/library/GenomicAlignments/help/coverage+2CBamFile-method.html /usr/lib64/R/library/GenomicAlignments/help/coverage+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/coverage+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/coverage+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/coverage+2Ccharacter-method.html /usr/lib64/R/library/GenomicAlignments/help/coverage-methods.html /usr/lib64/R/library/GenomicAlignments/help/coverage.html /usr/lib64/R/library/GenomicAlignments/help/elementMetadata+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/elementMetadata+3C-+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/encodeOverlaps+2CGRangesList+2CGRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/encodeOverlaps+2CIntegerRanges+2CIntegerRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/encodeOverlaps+2CIntegerRangesList+2CIntegerRanges-method.html /usr/lib64/R/library/GenomicAlignments/help/encodeOverlaps+2CIntegerRangesList+2CIntegerRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/encodeOverlaps-methods.html /usr/lib64/R/library/GenomicAlignments/help/encodeOverlaps.html /usr/lib64/R/library/GenomicAlignments/help/encodeOverlaps1.html /usr/lib64/R/library/GenomicAlignments/help/encoding+2COverlapEncodings-method.html /usr/lib64/R/library/GenomicAlignments/help/encodingHalves+2COverlapEncodings-method.html /usr/lib64/R/library/GenomicAlignments/help/encodingHalves+2Ccharacter-method.html /usr/lib64/R/library/GenomicAlignments/help/encodingHalves+2Cfactor-method.html /usr/lib64/R/library/GenomicAlignments/help/encodingHalves.html /usr/lib64/R/library/GenomicAlignments/help/explodeCigarOpLengths.html /usr/lib64/R/library/GenomicAlignments/help/explodeCigarOps.html /usr/lib64/R/library/GenomicAlignments/help/extractAlignmentRangesOnReference.html /usr/lib64/R/library/GenomicAlignments/help/extractQueryStartInTranscript.html /usr/lib64/R/library/GenomicAlignments/help/extractSkippedExonRanks+2COverlapEncodings-method.html /usr/lib64/R/library/GenomicAlignments/help/extractSkippedExonRanks+2Ccharacter-method.html /usr/lib64/R/library/GenomicAlignments/help/extractSkippedExonRanks+2Cfactor-method.html /usr/lib64/R/library/GenomicAlignments/help/extractSkippedExonRanks.html /usr/lib64/R/library/GenomicAlignments/help/extractSpannedExonRanks+2COverlapEncodings-method.html /usr/lib64/R/library/GenomicAlignments/help/extractSpannedExonRanks+2Ccharacter-method.html /usr/lib64/R/library/GenomicAlignments/help/extractSpannedExonRanks+2Cfactor-method.html /usr/lib64/R/library/GenomicAlignments/help/extractSpannedExonRanks.html /usr/lib64/R/library/GenomicAlignments/help/extractSteppedExonRanks+2COverlapEncodings-method.html /usr/lib64/R/library/GenomicAlignments/help/extractSteppedExonRanks+2Ccharacter-method.html /usr/lib64/R/library/GenomicAlignments/help/extractSteppedExonRanks+2Cfactor-method.html /usr/lib64/R/library/GenomicAlignments/help/extractSteppedExonRanks.html /usr/lib64/R/library/GenomicAlignments/help/findCompatibleOverlaps+2CGAlignmentPairs+2CGRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/findCompatibleOverlaps+2CGAlignments+2CGRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/findCompatibleOverlaps-methods.html /usr/lib64/R/library/GenomicAlignments/help/findCompatibleOverlaps.html /usr/lib64/R/library/GenomicAlignments/help/findMateAlignment.html /usr/lib64/R/library/GenomicAlignments/help/findOverlaps+2CGAlignmentPairs+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/findOverlaps+2CGAlignmentPairs+2CVector-method.html /usr/lib64/R/library/GenomicAlignments/help/findOverlaps+2CGAlignments+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/findOverlaps+2CGAlignments+2CVector-method.html /usr/lib64/R/library/GenomicAlignments/help/findOverlaps+2CGAlignmentsList+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/findOverlaps+2CGAlignmentsList+2CVector-method.html /usr/lib64/R/library/GenomicAlignments/help/findOverlaps+2CVector+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/findOverlaps+2CVector+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/findOverlaps+2CVector+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/findOverlaps-methods.html /usr/lib64/R/library/GenomicAlignments/help/findOverlaps.html /usr/lib64/R/library/GenomicAlignments/help/findSpliceOverlaps+2CBamFile+2CANY-method.html /usr/lib64/R/library/GenomicAlignments/help/findSpliceOverlaps+2CGAlignmentPairs+2CGRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/findSpliceOverlaps+2CGAlignments+2CGRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/findSpliceOverlaps+2CGRangesList+2CGRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/findSpliceOverlaps+2Ccharacter+2CANY-method.html /usr/lib64/R/library/GenomicAlignments/help/findSpliceOverlaps-methods.html /usr/lib64/R/library/GenomicAlignments/help/findSpliceOverlaps.html /usr/lib64/R/library/GenomicAlignments/help/first+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/first.html /usr/lib64/R/library/GenomicAlignments/help/flipQuery.html /usr/lib64/R/library/GenomicAlignments/help/flippedQuery+2COverlapEncodings-method.html /usr/lib64/R/library/GenomicAlignments/help/flippedQuery.html /usr/lib64/R/library/GenomicAlignments/help/flushDumpedAlignments.html /usr/lib64/R/library/GenomicAlignments/help/getDumpedAlignments.html /usr/lib64/R/library/GenomicAlignments/help/getListElement+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/granges+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/granges+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/granges+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/grglist+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/grglist+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/grglist+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/intra-range-methods.html /usr/lib64/R/library/GenomicAlignments/help/invertStrand+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/is.unsorted+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/isCompatibleWithSkippedExons+2COverlapEncodings-method.html /usr/lib64/R/library/GenomicAlignments/help/isCompatibleWithSkippedExons+2Ccharacter-method.html /usr/lib64/R/library/GenomicAlignments/help/isCompatibleWithSkippedExons+2Cfactor-method.html /usr/lib64/R/library/GenomicAlignments/help/isCompatibleWithSkippedExons.html /usr/lib64/R/library/GenomicAlignments/help/isCompatibleWithSplicing+2COverlapEncodings-method.html /usr/lib64/R/library/GenomicAlignments/help/isCompatibleWithSplicing+2Ccharacter-method.html /usr/lib64/R/library/GenomicAlignments/help/isCompatibleWithSplicing+2Cfactor-method.html /usr/lib64/R/library/GenomicAlignments/help/isCompatibleWithSplicing.html /usr/lib64/R/library/GenomicAlignments/help/isProperPair+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/isProperPair.html /usr/lib64/R/library/GenomicAlignments/help/junctions+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/junctions+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/junctions+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/junctions-methods.html /usr/lib64/R/library/GenomicAlignments/help/junctions.html /usr/lib64/R/library/GenomicAlignments/help/last+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/last.html /usr/lib64/R/library/GenomicAlignments/help/levels+2COverlapEncodings-method.html /usr/lib64/R/library/GenomicAlignments/help/levels.OverlapEncodings.html /usr/lib64/R/library/GenomicAlignments/help/makeGAlignmentPairs.html /usr/lib64/R/library/GenomicAlignments/help/mapFromAlignments+2CGenomicRanges+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/mapFromAlignments+2CIntegerRanges+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/mapFromAlignments.html /usr/lib64/R/library/GenomicAlignments/help/mapToAlignments+2CGenomicRanges+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/mapToAlignments+2CIntegerRanges+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/mapToAlignments.html /usr/lib64/R/library/GenomicAlignments/help/names+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/names+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/names+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/names+3C-+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/names+3C-+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/names+3C-+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/narrow+2CGappedReads-method.html /usr/lib64/R/library/GenomicAlignments/help/njunc+2CANY-method.html /usr/lib64/R/library/GenomicAlignments/help/njunc+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/njunc+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/njunc+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/njunc.html /usr/lib64/R/library/GenomicAlignments/help/order+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/parallel_slot_names+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/parallel_slot_names+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/parallel_slot_names+2COverlapEncodings-method.html /usr/lib64/R/library/GenomicAlignments/help/paths.rds /usr/lib64/R/library/GenomicAlignments/help/pcompare+2CGAlignments+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/pileLettersAt.html /usr/lib64/R/library/GenomicAlignments/help/pintersect+2CGAlignments+2CGRanges-method.html /usr/lib64/R/library/GenomicAlignments/help/pintersect+2CGRanges+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/pintersect.html /usr/lib64/R/library/GenomicAlignments/help/pmapFromAlignments+2CGenomicRanges+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/pmapFromAlignments+2CIntegerRanges+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/pmapFromAlignments.html /usr/lib64/R/library/GenomicAlignments/help/pmapToAlignments+2CGenomicRanges+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/pmapToAlignments+2CIntegerRanges+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/pmapToAlignments.html /usr/lib64/R/library/GenomicAlignments/help/qnarrow+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/qnarrow+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/qnarrow+2CGappedReads-method.html /usr/lib64/R/library/GenomicAlignments/help/qnarrow.html /usr/lib64/R/library/GenomicAlignments/help/qseq+2CGappedReads-method.html /usr/lib64/R/library/GenomicAlignments/help/qseq.html /usr/lib64/R/library/GenomicAlignments/help/queryLoc2refLoc.html /usr/lib64/R/library/GenomicAlignments/help/queryLocs2refLocs.html /usr/lib64/R/library/GenomicAlignments/help/qwidth+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/qwidth+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/qwidth+2CGappedReads-method.html /usr/lib64/R/library/GenomicAlignments/help/qwidth.html /usr/lib64/R/library/GenomicAlignments/help/ranges+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/ranges+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/ranges+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/rank+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/readGAlignmentPairs+2CBamFile-method.html /usr/lib64/R/library/GenomicAlignments/help/readGAlignmentPairs+2Ccharacter-method.html /usr/lib64/R/library/GenomicAlignments/help/readGAlignmentPairs.html /usr/lib64/R/library/GenomicAlignments/help/readGAlignments+2CBamFile-method.html /usr/lib64/R/library/GenomicAlignments/help/readGAlignments+2CBamViews-method.html /usr/lib64/R/library/GenomicAlignments/help/readGAlignments+2Ccharacter-method.html /usr/lib64/R/library/GenomicAlignments/help/readGAlignments.html /usr/lib64/R/library/GenomicAlignments/help/readGAlignmentsList+2CBamFile-method.html /usr/lib64/R/library/GenomicAlignments/help/readGAlignmentsList+2Ccharacter-method.html /usr/lib64/R/library/GenomicAlignments/help/readGAlignmentsList.html /usr/lib64/R/library/GenomicAlignments/help/readGappedReads+2CBamFile-method.html /usr/lib64/R/library/GenomicAlignments/help/readGappedReads+2Ccharacter-method.html /usr/lib64/R/library/GenomicAlignments/help/readGappedReads.html /usr/lib64/R/library/GenomicAlignments/help/readSTARJunctions.html /usr/lib64/R/library/GenomicAlignments/help/readTopHatJunctions.html /usr/lib64/R/library/GenomicAlignments/help/relistToClass+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/rglist+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/rglist+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/rname+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/rname+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/rname+3C-+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/rname+3C-+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/rname+3C-.html /usr/lib64/R/library/GenomicAlignments/help/rname.html /usr/lib64/R/library/GenomicAlignments/help/second+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/second.html /usr/lib64/R/library/GenomicAlignments/help/selectEncodingWithCompatibleStrand.html /usr/lib64/R/library/GenomicAlignments/help/seqinfo+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/seqinfo+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/seqinfo+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/seqinfo+3C-+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/seqinfo+3C-+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/seqinfo+3C-+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/seqlevelsInUse+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/seqnames+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/seqnames+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/seqnames+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/seqnames+3C-+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/seqnames+3C-+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/sequenceLayer.html /usr/lib64/R/library/GenomicAlignments/help/setops-methods.html /usr/lib64/R/library/GenomicAlignments/help/show+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/show+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/show+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/show+2COverlapEncodings-method.html /usr/lib64/R/library/GenomicAlignments/help/sort+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/stackStringsFromBam.html /usr/lib64/R/library/GenomicAlignments/help/stackStringsFromGAlignments.html /usr/lib64/R/library/GenomicAlignments/help/start+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/strand+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/strand+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/strand+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/strand+3C-+2CGAlignments+2CANY-method.html /usr/lib64/R/library/GenomicAlignments/help/strand+3C-+2CGAlignmentsList+2Ccharacter-method.html /usr/lib64/R/library/GenomicAlignments/help/strand+3C-+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/strandMode+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/strandMode+3C-+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/strandMode+3C-.html /usr/lib64/R/library/GenomicAlignments/help/strandMode.html /usr/lib64/R/library/GenomicAlignments/help/summarizeJunctions.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CBamViews+2Cmissing-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRanges+2CBamFile-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRanges+2CBamFileList-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRanges+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRanges+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRanges+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRanges+2CGRanges-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRanges+2CGRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRanges+2Ccharacter-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRangesList+2CBamFile-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRangesList+2CBamFileList-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRangesList+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRangesList+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRangesList+2CGAlignmentsList-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRangesList+2CGRanges-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRangesList+2CGRangesList-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps+2CGRangesList+2Ccharacter-method.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps-methods.html /usr/lib64/R/library/GenomicAlignments/help/summarizeOverlaps.html /usr/lib64/R/library/GenomicAlignments/help/unlist+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/update+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/updateObject+2CGAlignmentPairs-method.html /usr/lib64/R/library/GenomicAlignments/help/updateObject+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/validCigar.html /usr/lib64/R/library/GenomicAlignments/help/width+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/help/windows+2CGAlignments-method.html /usr/lib64/R/library/GenomicAlignments/html /usr/lib64/R/library/GenomicAlignments/html/00Index.html /usr/lib64/R/library/GenomicAlignments/html/GAlignmentPairs-class.html /usr/lib64/R/library/GenomicAlignments/html/GAlignments-class.html /usr/lib64/R/library/GenomicAlignments/html/GAlignmentsList-class.html /usr/lib64/R/library/GenomicAlignments/html/GappedReads-class.html /usr/lib64/R/library/GenomicAlignments/html/OverlapEncodings-class.html /usr/lib64/R/library/GenomicAlignments/html/R.css /usr/lib64/R/library/GenomicAlignments/html/cigar-utils.html /usr/lib64/R/library/GenomicAlignments/html/coordinate-mapping-methods.html /usr/lib64/R/library/GenomicAlignments/html/coverage-methods.html /usr/lib64/R/library/GenomicAlignments/html/encodeOverlaps-methods.html /usr/lib64/R/library/GenomicAlignments/html/findCompatibleOverlaps-methods.html /usr/lib64/R/library/GenomicAlignments/html/findMateAlignment.html /usr/lib64/R/library/GenomicAlignments/html/findOverlaps-methods.html /usr/lib64/R/library/GenomicAlignments/html/findSpliceOverlaps-methods.html /usr/lib64/R/library/GenomicAlignments/html/intra-range-methods.html /usr/lib64/R/library/GenomicAlignments/html/junctions-methods.html /usr/lib64/R/library/GenomicAlignments/html/pileLettersAt.html /usr/lib64/R/library/GenomicAlignments/html/readGAlignments.html /usr/lib64/R/library/GenomicAlignments/html/sequenceLayer.html /usr/lib64/R/library/GenomicAlignments/html/setops-methods.html /usr/lib64/R/library/GenomicAlignments/html/stackStringsFromGAlignments.html /usr/lib64/R/library/GenomicAlignments/html/summarizeOverlaps-methods.html /usr/lib64/R/library/GenomicAlignments/libs /usr/lib64/R/library/GenomicAlignments/libs/GenomicAlignments.so /usr/lib64/R/library/GenomicAlignments/unitTests /usr/lib64/R/library/GenomicAlignments/unitTests/test_GAlignments-class.R /usr/lib64/R/library/GenomicAlignments/unitTests/test_GAlignmentsList-class.R /usr/lib64/R/library/GenomicAlignments/unitTests/test_cigar-utils.R /usr/lib64/R/library/GenomicAlignments/unitTests/test_coordinate-mapping-methods.R /usr/lib64/R/library/GenomicAlignments/unitTests/test_findSpliceOverlaps-methods.R /usr/lib64/R/library/GenomicAlignments/unitTests/test_intra-range-methods.R /usr/lib64/R/library/GenomicAlignments/unitTests/test_readGAlignmentPairs.R /usr/lib64/R/library/GenomicAlignments/unitTests/test_readGAlignments.R /usr/lib64/R/library/GenomicAlignments/unitTests/test_readGAlignmentsList.R /usr/lib64/R/library/GenomicAlignments/unitTests/test_summarizeOverlaps-methods.R
Generated by rpm2html 1.8.1
Fabrice Bellet, Sun Oct 27 02:54:38 2024