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| Name: R-qtl | Distribution: Fedora Project |
| Version: 1.70 | Vendor: Fedora Project |
| Release: 1.fc42 | Build date: Fri Aug 23 13:57:06 2024 |
| Group: Unspecified | Build host: buildvm-s390x-02.s390.fedoraproject.org |
| Size: 7841763 | Source RPM: R-qtl-1.70-1.fc42.src.rpm |
| Packager: Fedora Project | |
| Url: https://rqtl.org/ | |
| Summary: Tools for analyzing QTL experiments | |
R-qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental crosses. Our goal is to make complex QTL mapping methods widely accessible and allow users to focus on modeling rather than computing. A key component of computational methods for QTL mapping is the hidden Markov model (HMM) technology for dealing with missing genotype data. We have implemented the main HMM algorithms, with allowance for the presence of genotyping errors, for backcrosses, intercrosses, and phase-known four-way crosses. The current version of R-qtl includes facilities for estimating genetic maps, identifying genotyping errors, and performing single-QTL genome scans and two-QTL, two-dimensional genome scans, by interval mapping (with the EM algorithm), Haley-Knott regression, and multiple imputation. All of this may be done in the presence of covariates (such as sex, age or treatment). One may also fit higher-order QTL models by multiple imputation and Haley-Knott regression.
GPL-3.0-only
* Fri Aug 23 2024 Mattias Ellert <mattias.ellert@physics.uu.se> - 1.70-1
- Update to 1.70
* Wed Jul 17 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.66-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild
* Thu Apr 25 2024 Iñaki Úcar <iucar@fedoraproject.org> - 1.66-4
- R-maint-sig mass rebuild
* Mon Jan 22 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.66-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Fri Jan 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.66-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Tue Dec 05 2023 Mattias Ellert <mattias.ellert@physics.uu.se> - 1.66-1
- Update to 1.66
* Sun Nov 26 2023 Mattias Ellert <mattias.ellert@physics.uu.se> - 1.62-1
- Update to 1.62
* Sun Jul 23 2023 Mattias Ellert <mattias.ellert@physics.uu.se> - 1.60-3
- Fix build requires
* Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.60-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Tue May 16 2023 Mattias Ellert <mattias.ellert@physics.uu.se> - 1.60-1
- Update to 1.60
- Drop workaround for broken openblas on aarch64 in RHEL 8 and 9
Fixed in RHEL 8.8 and 9.2 respectively
* Fri Apr 21 2023 Iñaki Úcar <iucar@fedoraproject.org> - 1.58-2
- R-maint-sig mass rebuild
* Wed Jan 25 2023 Mattias Ellert <mattias.ellert@physics.uu.se> - 1.58-1
- Update to 1.58
- Workaround broken openblas on aarch64 in RHEL 8 and 9
* Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.52-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Thu Sep 01 2022 Tom Callaway <spot@fedoraprojet.org> - 1.52-3
- rebuild for R 4.2.1
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