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Name: staden-io_lib | Distribution: Fedora Project |
Version: 1.14.8 | Vendor: Fedora Project |
Release: 5.fc42 | Build date: Sun Jan 19 12:42:31 2025 |
Group: Unspecified | Build host: buildvm-s390x-19.s390.fedoraproject.org |
Size: 1259324 | Source RPM: staden-io_lib-1.14.8-5.fc42.src.rpm |
Packager: Fedora Project | |
Url: http://staden.sourceforge.net | |
Summary: General purpose library to handle gene sequencing machine trace files |
The Staden I/O library provides a general purpose interface for reading and writing trace files and other bioinformatics experiment files. The programmer simply calls, for example, the read_reading function to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of Unix systems, MacOS X and MS Windows.
MIT
* Sun Jan 19 2025 Fedora Release Engineering <releng@fedoraproject.org> - 1.14.8-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild * Sat Jul 20 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.14.8-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild * Sat Jan 27 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.14.8-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Sat Jul 22 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.14.8-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Thu Feb 02 2023 Christian Iseli <christian.iseli@epfl.ch> 1.14.8-1 - new upstream 1.14.8 - so_version bumped to 11 * Thu Feb 02 2023 Jonathan Wakely <jwakely@redhat.com> - 1.12.4-26 - Patched for C99 compatibility * Sat Jan 21 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.12.4-25 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
/usr/bin/append_sff /usr/bin/convert_trace /usr/bin/cram_dump /usr/bin/cram_index /usr/bin/cram_size /usr/bin/extract_fastq /usr/bin/extract_qual /usr/bin/extract_seq /usr/bin/get_comment /usr/bin/hash_exp /usr/bin/hash_extract /usr/bin/hash_list /usr/bin/hash_sff /usr/bin/hash_tar /usr/bin/index_tar /usr/bin/makeSCF /usr/bin/scf_dump /usr/bin/scf_info /usr/bin/scf_update /usr/bin/scram_flagstat /usr/bin/scram_merge /usr/bin/scram_pileup /usr/bin/scram_test /usr/bin/scramble /usr/bin/srf2fasta /usr/bin/srf2fastq /usr/bin/srf_dump_all /usr/bin/srf_extract_hash /usr/bin/srf_extract_linear /usr/bin/srf_filter /usr/bin/srf_index_hash /usr/bin/srf_info /usr/bin/srf_list /usr/bin/trace_dump /usr/bin/ztr_dump /usr/lib/.build-id /usr/lib/.build-id/02 /usr/lib/.build-id/02/cb393581444dd851b9e0e65ccf95d569928ce0 /usr/lib/.build-id/06 /usr/lib/.build-id/06/3c82e3d7482482eb0f8c39cd5685ba38b2e186 /usr/lib/.build-id/0b /usr/lib/.build-id/0b/63b440d04e5f92188ea432c1f241c4fc1b4c36 /usr/lib/.build-id/0c /usr/lib/.build-id/0c/cd114eb8454c516c1f6d41a31ed5bbdd7e7f3a /usr/lib/.build-id/10 /usr/lib/.build-id/10/80b73e54a35444d48146a1f5a2307f8673c074 /usr/lib/.build-id/17 /usr/lib/.build-id/17/cc1835a7c85c3eae48ababa6f9516b7f58aa08 /usr/lib/.build-id/28 /usr/lib/.build-id/28/95979f626782d8a7ca4653b365633732387f77 /usr/lib/.build-id/30 /usr/lib/.build-id/30/9ae693956cdf7f09e2ca8354af90a3ffc11b77 /usr/lib/.build-id/32 /usr/lib/.build-id/32/0b51811e175dded6ef772fa72fdf31d1dd42c8 /usr/lib/.build-id/3e /usr/lib/.build-id/3e/a4fd16def556f87b20d60e640e1d6f4b9922a7 /usr/lib/.build-id/46 /usr/lib/.build-id/46/a0a0ca8a3c849e64adf0d865b5d987fe46e71d /usr/lib/.build-id/5e /usr/lib/.build-id/5e/a0d4343bc8e2a4fbf0fb67d8927adbbbe32898 /usr/lib/.build-id/62 /usr/lib/.build-id/62/9dc016ddab8ea8a0e7eac3f39afb8cef81cf4e /usr/lib/.build-id/6b /usr/lib/.build-id/6b/4933b7a49dd3cec57f66f50102b3a027e7610c /usr/lib/.build-id/71 /usr/lib/.build-id/71/ab7e824cba504630b953352c95ccf285733a9e /usr/lib/.build-id/73 /usr/lib/.build-id/73/cae8aee0e968fb6df6fe7955f6a6c677270c4f /usr/lib/.build-id/75 /usr/lib/.build-id/75/6ac1a46d4c941dc91bf08466fafa1c906d3543 /usr/lib/.build-id/85 /usr/lib/.build-id/85/e4fbb4b8e9a4dab1b46ebcd412bdff90ac260e /usr/lib/.build-id/95 /usr/lib/.build-id/95/9216f49e216a7d758a26f3cea0d63ef122095a /usr/lib/.build-id/99 /usr/lib/.build-id/99/85383be681d793de8bdd85414015a70fb1f42a /usr/lib/.build-id/a2 /usr/lib/.build-id/a2/ff09ca761b6b1dc30c76f763086b61447c3f69 /usr/lib/.build-id/ad /usr/lib/.build-id/ad/598eff173ee4735a28babddf64af1dcefb523b /usr/lib/.build-id/bf /usr/lib/.build-id/bf/b593797cf2cc6987bae2c46a1e459a4a9a8a82 /usr/lib/.build-id/c2 /usr/lib/.build-id/c2/9366e3332aee4c9294925c81a5d176e48baef7 /usr/lib/.build-id/ca /usr/lib/.build-id/ca/101fb51f923df1ccd0800502c18207c2f93638 /usr/lib/.build-id/cc /usr/lib/.build-id/cc/4e0a8d5b6af45994eda68209e1c6574251ea4c /usr/lib/.build-id/cd /usr/lib/.build-id/cd/2cce1059f08220a86eed74e7d83881e43b884b /usr/lib/.build-id/d0 /usr/lib/.build-id/d0/98b046593c8c7e84c55c00aae9a364fa2e9beb /usr/lib/.build-id/d1 /usr/lib/.build-id/d1/bd25caf3243eded0f0d8173388fc1ebbbaebbf /usr/lib/.build-id/dd /usr/lib/.build-id/dd/1a6242fd7a37800d85f05cb6a91c783bbab10c /usr/lib/.build-id/e5 /usr/lib/.build-id/e5/e566b311448ee1098cfef49bcc5a99fe043ea7 /usr/lib/.build-id/e7 /usr/lib/.build-id/e7/e9f8a4fe4ca2b9230b995192e5e3b30a29b43e /usr/lib/.build-id/eb /usr/lib/.build-id/eb/9ea8a89124c2f0eb919cd477a939ee3e791e98 /usr/lib/.build-id/fc /usr/lib/.build-id/fc/2be05f85603bb07a8bb94ed98032631f712087 /usr/lib/.build-id/fd /usr/lib/.build-id/fd/a0b08c987fbe422a62e3728325aebe84fafe2d /usr/lib/.build-id/ff /usr/lib/.build-id/ff/92da221d5f321f93c442554da00f56c80a0043 /usr/lib64/libstaden-read.so.11 /usr/lib64/libstaden-read.so.11.0.6 /usr/share/doc/staden-io_lib /usr/share/doc/staden-io_lib/CHANGES /usr/share/doc/staden-io_lib/COPYRIGHT /usr/share/doc/staden-io_lib/README /usr/share/doc/staden-io_lib/docs /usr/share/doc/staden-io_lib/docs/Hash_File_Format /usr/share/doc/staden-io_lib/docs/ZTR_format /usr/share/man/man1/scramble.1.gz /usr/share/man/man1/srf2fasta.1.gz /usr/share/man/man1/srf2fastq.1.gz /usr/share/man/man1/srf_index_hash.1.gz /usr/share/man/man1/srf_info.1.gz /usr/share/man/man1/srf_list.1.gz
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