fastx_toolkit-0.0.14-37.fc42 RPM for x86_64

From Fedora Rawhide for x86_64 / f

The FASTX-Toolkit is a collection of command line tools for
Short-Reads FASTA/FASTQ files preprocessing.

Next-Generation sequencing machines usually produce FASTA or FASTQ
files, containing multiple short-reads sequences (possibly with
quality information).

The main processing of such FASTA/FASTQ files is mapping (aka
aligning) the sequences to reference genomes or other databases using
specialized programs. Example of such mapping programs are: Blat,
SHRiMP, LastZ, MAQ and many many others.

However, It is sometimes more productive to preprocess the FASTA/FASTQ
files before mapping the sequences to the genome - manipulating the
sequences to produce better mapping results.

The FASTX-Toolkit tools perform some of these preprocessing tasks.

Provides

• fastx_toolkit
• fastx_toolkit(x86-64)

Requires

• /usr/bin/bash
• /usr/bin/perl
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.14)(64bit)
• libc.so.6(GLIBC_2.2.5)(64bit)
• libc.so.6(GLIBC_2.3.4)(64bit)
• libc.so.6(GLIBC_2.34)(64bit)
• libc.so.6(GLIBC_2.38)(64bit)
• libc.so.6(GLIBC_2.4)(64bit)
• libc.so.6(GLIBC_ABI_DT_RELR)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit)
• libgcc_s.so.1(GCC_3.3.1)(64bit)
• libgtextutils-0.7.so.0()(64bit)
• libstdc++.so.6()(64bit)
• libstdc++.so.6(CXXABI_1.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.5)(64bit)
• libstdc++.so.6(CXXABI_1.3.9)(64bit)
• libstdc++.so.6(GLIBCXX_3.4)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.15)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.18)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.29)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.30)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.32)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
• perl(Carp)
• perl(Data::Dumper)
• perl(GD::Graph::bars)
• perl(Getopt::Long)
• perl(IO::Handle)
• perl(PerlIO::gzip)
• perl(strict)
• perl(warnings)
• perl-GDGraph
• perl-PerlIO-gzip
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1
• rtld(GNU_HASH)
• sed

License

AGPL-3.0-or-later

Changelog

* Thu Jan 16 2025 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-37
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild
* Wed Jul 17 2024 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-36
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild
* Sun Apr 21 2024 Miroslav Suchý <msuchy@redhat.com> - 0.0.14-35
  - convert license to SPDX
* Wed Jan 24 2024 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-34
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Fri Jan 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-33
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-32
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-31
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild

Files

/usr/bin/fasta_clipping_histogram.pl
/usr/bin/fasta_formatter
/usr/bin/fasta_nucleotide_changer
/usr/bin/fastq_masker
/usr/bin/fastq_quality_boxplot_graph.sh
/usr/bin/fastq_quality_converter
/usr/bin/fastq_quality_filter
/usr/bin/fastq_quality_trimmer
/usr/bin/fastq_to_fasta
/usr/bin/fastx_artifacts_filter
/usr/bin/fastx_barcode_splitter.pl
/usr/bin/fastx_clipper
/usr/bin/fastx_collapser
/usr/bin/fastx_nucleotide_distribution_graph.sh
/usr/bin/fastx_nucleotide_distribution_line_graph.sh
/usr/bin/fastx_quality_stats
/usr/bin/fastx_renamer
/usr/bin/fastx_reverse_complement
/usr/bin/fastx_trimmer
/usr/bin/fastx_uncollapser
/usr/lib/.build-id
/usr/lib/.build-id/4b
/usr/lib/.build-id/4b/6f52a03242eeede52d4b99839018b8c58767eb
/usr/lib/.build-id/52
/usr/lib/.build-id/52/ab36607db4c5651150a0a0cce293abca45448e
/usr/lib/.build-id/58
/usr/lib/.build-id/58/d996a8f40f18fb3ef0017ce36d88b9528aead4
/usr/lib/.build-id/6e
/usr/lib/.build-id/6e/a25a7310dd7a90527730c88e897692bdb692f8
/usr/lib/.build-id/70
/usr/lib/.build-id/70/cc00d989bf2c25fc2c343dae25cdd9be80587e
/usr/lib/.build-id/71
/usr/lib/.build-id/71/48f9db91f57d2948a4ab0072bea683d6053037
/usr/lib/.build-id/79
/usr/lib/.build-id/79/09f37803747ec26226baf30ec891fb76427f88
/usr/lib/.build-id/87
/usr/lib/.build-id/87/5374bfeaec75191f8afc8f343058fc3a0301f9
/usr/lib/.build-id/96
/usr/lib/.build-id/96/d1b3a282b153dc8059a03a460d1c8efeb84fa2
/usr/lib/.build-id/a6
/usr/lib/.build-id/a6/a82b29f0b5446a6eb694260f77da4bf603b49f
/usr/lib/.build-id/bc
/usr/lib/.build-id/bc/a7197c400b9032d4816c0777517065abf283ec
/usr/lib/.build-id/d0
/usr/lib/.build-id/d0/5814cd48082d58162da56f6bff4616aa6994b3
/usr/lib/.build-id/d6
/usr/lib/.build-id/d6/f3a32c281e8996d0daca421241f62d8bfb9aed
/usr/lib/.build-id/d8
/usr/lib/.build-id/d8/af69df7c3c73408459a909e238ffc2e7cb326d
/usr/lib/.build-id/fc
/usr/lib/.build-id/fc/0fcf0a05f1758b212368d826b9c1c185108bd0
/usr/share/doc/fastx_toolkit
/usr/share/doc/fastx_toolkit/AUTHORS
/usr/share/doc/fastx_toolkit/COPYING
/usr/share/doc/fastx_toolkit/NEWS
/usr/share/doc/fastx_toolkit/README
/usr/share/doc/fastx_toolkit/THANKS

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Fabrice Bellet, Mon Jan 27 23:42:32 2025