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| Name: python3-tables | Distribution: SUSE Linux Enterprise 15 SP3 |
| Version: 3.6.1 | Vendor: openSUSE |
| Release: bp153.2.10 | Build date: Sat Apr 10 11:45:52 2021 |
| Group: Unspecified | Build host: obs-arm-8 |
| Size: 9932805 | Source RPM: python-tables-3.6.1-bp153.2.10.src.rpm |
| Packager: https://bugs.opensuse.org | |
| Url: https://github.com/PyTables/PyTables | |
| Summary: Hierarchical datasets for Python | |
PyTables is a package for managing hierarchical datasets and designed to efficently cope with extremely large amounts of data. PyTables is built on top of the HDF5 library and the NumPy package and features an object-oriented interface that, combined with C-code generated from Pyrex sources, makes of it a fast, yet extremely easy to use tool for interactively save and retrieve large amounts of data.
BSD-3-Clause
* Wed Feb 17 2021 Ben Greiner <code@bnavigator.de>
- Skip python36 build: python36-numpy was dropped in Tumbleweed
due to NEP 29
- Add tables-pr862-lowercasefdtype.patch to support NumPy 1.20
gh#PyTables/PyTables#862
* Thu Dec 24 2020 Benjamin Greiner <code@bnavigator.de>
- remove mock requirement
- add PyTables-compat-numpy119.patch for compatibility with numpy
1.19
- add PyTables-pr810-tostring.patch in order to avoid numerous
deprecation warnings -- gh#PyTables/PyTables#810
- add PyTables-skip-test_vlarray.patch in order to skip failing
tests -- gh#PyTables/PyTables#845
* Tue May 19 2020 Petr Gajdos <pgajdos@suse.com>
- %python3_only -> %python_alternative
* Sat Nov 09 2019 Arun Persaud <arun@gmx.de>
- specfile:
* make it python3 only
* remove six
* update required version for numpy and numexpr
- update to version 3.6.1:
* Maintenance release to fix packaging issues. No new features or
bugfixes.
- changes from version 3.6.0:
* PyTables 3.6 no longer supports Python 2.7 see PR #747.
* Improvements
+ Full python 3.8 support.
+ On Windows PyTables wheels on PyPI are linked to
`pytables_hdf5.dll` instead of `hdf5.dll` to prevent collisions
with other packages/wheels that also vendor `hdf5.dll`. This
should prevent problems that arise when a different version of a
dll is imported that the version to which the program was linked
to. This problem is known as "DLL Hell". With the renaming of
the HDF5 DLL to `pytables_hdf5.dll` these problems should be
solved.
* Bugfixes
+ Bugfix for HDF5 files/types with padding. For details see
:issue:`734`.
+ More fixes for python 3.8 compatibility: Replace deprecated
time.clock with time.perf_counter Thanks to Sergio Pascual
(sergiopasra). see :issue:`744` and PR #745.
+ Improvements in tests as well as clean up from dropping Python
2.7 support. Thanks to Seth Troisi (sethtroisi).
* Mon Jul 22 2019 Todd R <toddrme2178@gmail.com>
- Update to 3.5.2
* Fixed compatibility with python 3.8: Fixed `Dictonary keys changed during
iteration` RuntimeError while moving/renameing a node.
Thanks to Christoph Gohlke for reporting and Miro Hroncok for help with
building PyTables for python 3.8alpha (cython compatibility).
* Fixed a bug in offset calculations producing floats instead of ints
affecting python 3. See PR #736. Thanks to Brad Montgomery.
- Update to 3.5.1
* Maintenance release to fix how PyPi repo is handling wheel versions.
- Update to 3.5.0
* When copying data from native HDF5 files with padding in compound types,
the padding is not removed now by default. This allows for better
compatibility with existing HDF5 applications that expect the padding
to stay there.
Also, when the `description` is a NumPy struct array with padding, this
is honored now. The previous behaviour (i.e. getting rid of paddings) can
be replicated by passing the new `allow_padding` parameter when opening
a file. For some examples, see the new `examples/tables-with-padding.py`
and `examples/attrs-with-padding.py`. For details on the implementation
* Added a new flag `--dont-allow-padding` in `ptrepack` utility so as to
replicate the previous behaviour of removing padding during file copies.
The default is to honor the original padding in copies.
* Improve compatibility with numpy 1.16.
* Improve detection of the LZO2 library at build time.
* Suppress several warnings.
* Add AVX2 support for Windows.
- Rebase Never-use-the-msse2-flag-explicitly.patch
- Remove upstream-included patches:
* pytables_no_unsafe_write.patch
* pytables_fix_exception_check.patch
* Wed Feb 13 2019 Todd R <toddrme2178@gmail.com>
- Add patches for numpy 1.16 compatibility:
* pytables_fix_exception_check.patch
from: https://github.com/PyTables/PyTables/commit/46fa2f07c00613ed6b647b2cf44e388f547fe668
* pytables_no_unsafe_write.patch
from: https://github.com/PyTables/PyTables/commit/f6b64c942fb91e6c261fa455969a38482c22beeb
* Fri Aug 10 2018 tchvatal@suse.com
- Drop python-unittest2 dependency it was needed only on py2.6
* Wed Jun 13 2018 toddrme2178@gmail.com
- Update to 3.4.4
+ Improvements
* Environment variable to control the use of embedded libraries.
* Include citation in repository.
+ Bugs fixed
* Fixed import error with numexpr 2.6.5.dev0
* Fixed linter warnings.
* Fixed for re.split() is version detection.
* Fixed test failures with Python 2.7 and NumPy 1.14.3
- Remove upstream-included initRecArray_tuples.patch
* Thu May 03 2018 toddrme2178@gmail.com
- Add initRecArray_tuples.patch
Upstream bug report: https://github.com/PyTables/PyTables/issues/688
From: https://github.com/PyTables/PyTables/pull/689
Should be in next release
* Wed May 02 2018 tchvatal@suse.com
- Version update to 3.4.3:
* On interactive python sessions, group/attribute __dir__() method
autocompletes children that are named as valid python identifiers.
* Implement Group.__getitem__() to have groups act as python-containers,
so code like this works: hfile.root['some child'].
* Enable building with Intel compiler (icc/icpc).
* PEP 519 support, using new os.fspath method.
* Optional disable recording of ctime (metadata creation time) when
creating datasets that makes possible to get bitwise identical output
from repeated runs.
* Prevent from reading all rows for each coord in a VLArray when
indexing using a list .
* Fixed division by zero when using _convert_time64() with an empty
nparr array.
* Fixed deprecation warnings with numpy 1.14.
* Skip DLL check when running from a frozen app.
* Fixed behaviour with slices out of range.
- Drop merged patch fix_numpy_recarray.patch
- Add patch Never-use-the-msse2-flag-explicitly.patch to avoid using
msse2 and avx on buildbots that support it, as we can be on non
avx machines...
* Mon Feb 26 2018 toddrme2178@gmail.com
- Add fix_numpy_recarray.patch
Fixes issues with recarrays under numpy 1.14.
Patch accepted upstream. Should be in next release.
From: https://github.com/PyTables/PyTables/pull/664
* Tue Apr 25 2017 toddrme2178@gmail.com
- Update to version 3.4.2
+ Improvements
* setup.py detects conda env and uses installed conda
(hdf5, bzip2, lzo and/or blosc) packages when building from
source.
+ Bugs fixed
* Linux wheels now built against built-in blosc.
* Fixed windows absolute paths in ptrepack, ptdump, ptree.
:issue:`616`. Thanks to oscar6echo.
- Update to version 3.4.1
+ Bugs fixed
* Fixed bug in ptrepack
- Switch to hdf5 1.10 series.
- Implement single-spec version.
* Thu Aug 25 2016 toddrme2178@gmail.com
- hdf5_18 has been renamed to hdf5-1_8.
* Tue Aug 16 2016 toddrme2178@gmail.com
- update to version 3.2.3.1:
* Fixed issues with pip install.
- update to version 3.2.3:
* Improvements
+ It is now possible to use HDF5 with the new shared library
naming scheme (>= 1.8.10, hdf5.dll instead of hdf5dll.dll) on
Windows (gh-540). Thanks to Tadeu Manoel.
+ Now :program: ptdump sorts output by node name and does not
print a backtrace if file cannot be opened. Thanks to Zbigniew
Jędrzejewski-Szmek.
* Bugs fixed
+ Only run tables.tests.test_basics.UnicodeFilename if the
filesystem encoding is utf-8. Closes gh-485.
+ Add lib64 to posix search path. (closes gh-507) Thanks to Mehdi
Sadeghi.
+ Ensure cache entries are removed if fewer than 10 (closes
gh-529). Thanks to Graham Jones.
+ Fix segmentation fault in a number of test cases that use
index.Index (closes gh-532 and gh-533). Thanks to Diane Trout.
+ Fixed the evaluation of transcendental functions when numexpr is
compiled with VML support (closes gh-534, PR #536). Thanks to
Tom Kooij.
+ Make sure that index classes use buffersizes that are a multiple
of chunkshape[0] (closes gh-538, PR #538). Thanks to Tom Kooij.
+ Ensure benchmark paths exist before benchmarks are executed (PR
[#544]). Thanks to rohitjamuar.
* Other changes
+ Minimum Cython version is now v0.21
- specfile:
* add python-py-cpuinfo to build requirements
* depend on hdf5_18-devel, since pytables is not compatible with
hdf5 >= 1.10
* Mon Aug 15 2016 toddrme2178@gmail.com
- Fix update-alternatives implementation.
* Mon Feb 01 2016 toddrme2178@gmail.com
- update to version 3.2.2:
* Fix AssertionError in Row.__init_loop. See gh-477.
* Fix issues with Cython 0.23. See gh-481.
* Only run tables.tests.test_basics.UnicodeFilename if the
filesystem encoding is utf-8. Closes gh-485.
* Fix missing missing PyErr_Clear. See gh-#486.
* Fix the C type of some numpy attributes. See gh-494.
* Cast selection indices to integer. See gh-496.
* Fix indexesextension._keysort_string. Closes gh-497 and gh-498.
- changes from version 3.2.1.1:
* Fix permission on distributed source distribution
- update to version 3.2.1:
* Fix indexesextension._keysort. Fixes gh-455. Thanks to Andrew Lin.
- Implement update-alternatives
* Thu May 14 2015 benoit.monin@gmx.fr
- update to version 3.2.0:
Improvements
* The nrowsinbuf is better computed now for EArray/CArray having
a small chunkshape in the main dimension. Fixes #285.
* PyTables should be installable very friendly via pip, including
NumPy being installed automatically in the unlikely case it is
not yet installed in the system. Thanks to Andrea Bedini.
* setup.py has been largely simplified and now it requires
setuptools. Although we think this is a good step, please keep
us informed this is breaking some installation in a very bad
manner.
* setup.py now is able to used pkg-config, if available, to
locate required libraries (hdf5, bzip2, etc.). The use of
pkg-config can be controlled via setup.py command line flags or
via environment variables. Please refer to the installation
guide (in the User Manual) for details. Closes gh-442.
* It is now possible to create a new node whose parent is a
softlink to another group (see gh-422). Thanks to Alistair
Muldal.
* link.SoftLink objects no longer need to be explicitly
dereferenced. Methods and attributes of the linked object are
now automatically accessed when the user acts on a soft-link
(see gh-399). Thanks to Alistair Muldal.
* Now ptrepack recognizes hardlinks and replicates them in the
output (repacked) file. This saves disk space and makes
repacked files more conformal to the original one. Closes
gh-380.
* New pttree script for printing HDF5 file contents as a pretty
ASCII tree (closes gh-400). Thanks to Alistair Muldal.
* The internal Blosc library has been downgraded to version
1.4.4. This is in order to still allow using multiple threads
inside Blosc, even on multithreaded applications (see gh-411,
gh-412, gh-437 and gh-448).
* The print_versions() function now also reports the version of
compression libraries used by Blosc.
* Now the setup.py tries to use the ‘-march=native’ C flag by
default. In falls back on ‘-msse2’ if ‘-march=native’ is not
supported by the compiler. Closes gh-379.
* Fixed a spurious unicode comparison warning (closes gh-372 and
gh-373).
* Improved handling of empty string attributes. In previous
versions of PyTables empty string were stored as scalar HDF5
attributes having size 1 and value ‘0’ (an empty null
terminated string). Now empty string are stored as HDF5
attributes having zero size
* Added a new cookbook recipe and a couple of examples for simple
threading with PyTables.
* The redundant utilsextension.get_indices() function has been
eliminated (replaced by slice.indices()). Closes gh-195.
* Allow negative indices in point selection (closes gh-360)
* Index wasn’t being used if it claimed there were no results.
Closes gh-351 (see also gh-353)
* Atoms and Col types are no longer generated dynamically so now
it is easier for IDEs and static analysis tool to handle them
(closes gh-345)
* The keysort functions in idx-opt.c have been cythonised using
fused types. The perfomance is mostly unchanged, but the code
is much more simpler now. Thanks to Andrea Bedini.
* Small unit tests re-factoring
Bugs fixed
* Fixed compatibility problems with numpy 1.9 and 1.10-dev
(closes gh-362 and gh-366)
* Fixed compatibility with Cython >= 0.20 (closes gh-386 and
gh-387)
* Fixed support for unicode node names in LRU cache (only Python
2 was affected). Closes gh-367 and gh-369.
* Fixed support for unicode node titles (only Python 2 was
affected). Closes gh-370 and gh-374.
* Fixed a bug that caused the silent truncation of unicode
attributes containing the ‘0’ character. Closes gh-371.
* Fixed descr_from_dtype() to work as expected with complex
types. Closes gh-381.
* Fixed the tests.test_basics.ThreadingTestCase test case. Closes
gh-359.
* Fix incomplete results when performing the same query twice and
exhausting the second iterator before the first. The first one
writes incomplete results to seqcache (gh-353)
* Fix false results potentially going to seqcache if
tableextension.Row.update() is used during iteration (see
gh-353)
* Fix Column.create_csindex() when there’s NaNs
* Fixed handling of unicode file names on windows (closes gh-389)
* No longer not modify sys.argv at import time (closes gh-405)
* Fixed a performance issue on NFS (closes gh-402)
* Fixed a nasty problem affecting results of indexed queries.
Closes gh-319 and probably gh-419 too.
* Fixed another problem affecting results of indexed queries too.
Closes gh-441.
* Replaced “len(xrange(start, stop, step))” -> “len(xrange(0,
stop - start, step))” to fix issues with large row counts with
Python 2.x. Fixes #447.
Other changes
* Cython is not a hard dependency anymore (although developers
will need it so as to generated the C extension code).
* The number of threads used by default for numexpr and Blosc
operation that was set to the number of available cores have
been reduced to 2. This is a much more reasonable setting for
not creating too much overhead.
- add python-setuptools as a new build dependency
- pass -q to %setup to avoid spamming the build log
- rename README.txt to README.rst: changed upstream
- add new binary pttree to the package
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