python310-pymol-2.5.0-1.5 RPM for i586

From OpenSuSE Ports Tumbleweed for i586

PyMOL is a molecular graphics system targetted at medium to large
biomolecules like proteins. It can generate molecular graphics
images and animations.

Features include:

* Visualization of molecules, molecular trajectories and surfaces
  of crystallography data or orbitals
* Molecular builder and sculptor
* Internal raytracer and movie generator
* Fully extensible and scriptable via a python interface

The file formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile,
ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps.

Provides

• python310-pymol
• pymol
• python3.10dist(pymol)
• python310-pymol(x86-32)
• python3dist(pymol)

Requires

• /bin/sh
• /bin/sh
• /bin/sh
• libGL.so.1
• libGLEW.so.2.2
• libc.so.6
• libc.so.6(GLIBC_2.0)
• libc.so.6(GLIBC_2.1)
• libc.so.6(GLIBC_2.1.3)
• libc.so.6(GLIBC_2.2)
• libc.so.6(GLIBC_2.3)
• libc.so.6(GLIBC_2.3.4)
• libc.so.6(GLIBC_2.32)
• libc.so.6(GLIBC_2.33)
• libc.so.6(GLIBC_2.38)
• libc.so.6(GLIBC_2.4)
• libc.so.6(GLIBC_2.7)
• libfreetype.so.6
• libgcc_s.so.1
• libgcc_s.so.1(GCC_3.0)
• libgcc_s.so.1(GCC_3.3.1)
• libgcc_s.so.1(GLIBC_2.0)
• libgomp.so.1
• libgomp.so.1(GOMP_1.0)
• libgomp.so.1(GOMP_4.0)
• libgomp.so.1(OMP_1.0)
• libm.so.6
• libm.so.6(GLIBC_2.0)
• libm.so.6(GLIBC_2.1)
• libm.so.6(GLIBC_2.27)
• libm.so.6(GLIBC_2.29)
• libm.so.6(GLIBC_2.35)
• libnetcdf.so.19
• libpng16.so.16
• libpng16.so.16(PNG16_0)
• libstdc++.so.6
• libstdc++.so.6(CXXABI_1.3)
• libstdc++.so.6(CXXABI_1.3.5)
• libstdc++.so.6(CXXABI_1.3.8)
• libstdc++.so.6(GLIBCXX_3.4)
• libstdc++.so.6(GLIBCXX_3.4.11)
• libstdc++.so.6(GLIBCXX_3.4.14)
• libstdc++.so.6(GLIBCXX_3.4.15)
• libstdc++.so.6(GLIBCXX_3.4.18)
• libstdc++.so.6(GLIBCXX_3.4.20)
• libstdc++.so.6(GLIBCXX_3.4.21)
• libstdc++.so.6(GLIBCXX_3.4.26)
• libstdc++.so.6(GLIBCXX_3.4.29)
• libstdc++.so.6(GLIBCXX_3.4.32)
• libstdc++.so.6(GLIBCXX_3.4.9)
• libxml2.so.2
• libxml2.so.2(LIBXML2_2.4.30)
• libxml2.so.2(LIBXML2_2.6.0)
• libxml2.so.2(LIBXML2_2.6.3)
• python(abi) = 3.10
• python310-numpy
• python310-pmw
• python310-qt5
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PartialHardlinkSets) <= 4.0.4-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1
• update-alternatives

License

Python-2.0

Changelog

* Fri Aug 11 2023 <hsk17@mail.de>
  - update to 2.5.0
    * File Import/Export
    - DX binary map import (*dxbin)
    - PDB/MMTF export: symmetry information now added
    - Improved FASTA import
    - Support for map.gz and mrc.gz extensions
    * Builder & Panels
    - Improved Fuse command (disallows hypervalent bonds,
      substitute monovalent atoms instead of attaching to them)
    - Customizable keyboard shortcut menu
    - Properties inspector now supports unsetting settings with
      “Delete” key
    * Graphics & Visualization
    - Ray interior colors now match primitives with
      `set ray_interior_color, atomic`
    - Isomesh transparency support
    - `sphere_mode` 5 removed (9 as replacement)
    - Curved cartoon cylindrical helices
    - Isosurface generation via marching cubes with setting
      `isosurface_algorithm, (0, 1)` (0 requires VTKm)
    * PBC Handling
    - Periodic boundary conditions supported in rebond, smooth,
      and intra_fit
    * Python API
    - Python 2 support removed
    - pbc argument added to rebond, smooth, and intra_fit
    - png(None) returns bytes
    - scene_order() allows list for `names`
    - pbc_wrap() and pbc_unwrap added
    - matrix_reset() supports `state=0` for all states
    - editing_ring() added
    - unset now restores the default value for global settings
    - load_traj now uses state=1 by default
    - get_area command and dots representation: Exclude
      “flag ignore” atoms
  - no-o3.patch: adapt to 2.5.0
  - spec file:
    * some tweaks to adapt to 2.5.0
    * remove test related stuff; test run commands are removed
      from 2.5.0 as unmaintained and useless
* Wed May 19 2021 Steve Kowalik <steven.kowalik@suse.com>
  - Remove the execute bit from some test scripts to remove a spurious
    requirement.
* Sun Feb 21 2021 andy great <andythe_great@pm.me>
  - Skip python3.6 because numpy no longer support it.
  - Add mmtf-cpp-devel and use msgpackc.
  - Attempt to get the test to run.
    * Use _service to download pymol-testing for test data.
    * Use bcond to enable/disable testing arguments.
    * Pymol seems to need itself to test.
    * Add %check section.
* Tue Sep 01 2020 Matej Cepl <mcepl@suse.com>
  - Update to 2.4.0:
    * load_traj
    - support netcdf format
    - support `selection` argument with all file formats
    * CCP4/MRC Map Support
    - Distinguish .ccp4 and .mrc extensions (regarding origin)
    - .map extension: auto-detect the format
    * New distance mode 8
    * MMTF export: Consider `pdb_retain_ids` setting
    * GLTF export (based on collada2gltf)
    * New `internal_gui_name_color_mode` setting
    * MPEG4 Movie export: Apply `movie_fps` setting to exported
      file
    * Python API
    - Improved error handling with exceptions
    - New: cmd.rebond()
    - New: cmd.get_capabilities()
    - Fix: cmd.get_bonds() state off by one
    - cmd.fit() et al.: raise on error
    * Launch Options
    - Restore `-V` launch argument for external GUI height
    - macOS: `open` event opens new window
* Sat Feb 01 2020 Stefan Brüns <stefan.bruens@rwth-aachen.de>
  - Remove glew runtime dependency (only contains debug tools and
    documentation).
  - Remove freeglut build dependency (unused unless enabled with
    '--glut' setup.py option).
  - Use https for URL.
* Mon Feb 11 2019 Matej Cepl <mcepl@suse.com>
  - Upgrade to 2.3.0:
    * atom-level cartoon_transparency
    * aln export for Nucleic Acids
    * new API function: cmd.set_raw_alignment()
    * fetch async=0 by default
    * fast MMTF export (requires mmtf-cpp)
    * new setting: seq_view_gap_mode
* Thu Jan 03 2019 opensuse-packaging@opensuse.org
  - Update to version 2.2.0+git.1544795767.c481a7c1:
    * fix SettingUniqueFromPyList w/ float3
    * remove pymol::Image::Image(T&& vec, ...)
    * refactor: pymol::Image tweaks
    * rewrite "get_raw_alignment"
    * refactor: pymol::vla::operator->() usage
    * fix #16 pymol::vla::operator[] for VS2015 32bit
    * fix pymol::vla::operator+ for VS2015
    * pymol::Image::pixels()
    * fix build
    * fix macOS build
  - Switch off msgpackc as we don't have mmtf-cpp packaged.
* Thu Aug 23 2018 tchvatal@suse.com
  - Version update to 2.2.0:
    * Switch devel links to github
    * No finegraned news file see ChangeLog for commit info
  - Rebase patch no-o3.patch
* Thu Aug 23 2018 tchvatal@suse.com
  - Fix fdupes call
  - Install license and docu files
* Wed Jun 06 2018 jengelh@inai.de
  - Trim marketing words from description.

Files

/etc/alternatives/pymol
/usr/bin/pymol
/usr/bin/pymol-3.10
/usr/lib/python3.10/site-packages
/usr/lib/python3.10/site-packages/chempy
/usr/lib/python3.10/site-packages/chempy/__init__.py
/usr/lib/python3.10/site-packages/chempy/__pycache__
/usr/lib/python3.10/site-packages/chempy/__pycache__/__init__.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/chempy/__pycache__/__init__.cpython-310.pyc
/usr/lib/python3.10/site-packages/chempy/__pycache__/arc.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/chempy/__pycache__/arc.cpython-310.pyc
/usr/lib/python3.10/site-packages/chempy/__pycache__/bond_amber.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/chempy/__pycache__/bond_amber.cpython-310.pyc
/usr/lib/python3.10/site-packages/chempy/__pycache__/bond_mmff.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/chempy/__pycache__/bond_mmff.cpython-310.pyc
/usr/lib/python3.10/site-packages/chempy/__pycache__/bonds.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/chempy/__pycache__/bonds.cpython-310.pyc
/usr/lib/python3.10/site-packages/chempy/__pycache__/brick.cpython-310.opt-1.pyc
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/usr/lib/python3.10/site-packages/chempy/__pycache__/xyz.cpython-310.pyc
/usr/lib/python3.10/site-packages/chempy/arc.py
/usr/lib/python3.10/site-packages/chempy/bmin
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/usr/lib/python3.10/site-packages/chempy/bonds.py
/usr/lib/python3.10/site-packages/chempy/brick.py
/usr/lib/python3.10/site-packages/chempy/cc1.py
/usr/lib/python3.10/site-packages/chempy/champ
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/usr/lib/python3.10/site-packages/chempy/charge.py
/usr/lib/python3.10/site-packages/chempy/cif.py
/usr/lib/python3.10/site-packages/chempy/cpv.py
/usr/lib/python3.10/site-packages/chempy/dictdb.py
/usr/lib/python3.10/site-packages/chempy/fast
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/usr/lib/python3.10/site-packages/chempy/lst.py
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/usr/lib/python3.10/site-packages/chempy/map.py
/usr/lib/python3.10/site-packages/chempy/mass.py
/usr/lib/python3.10/site-packages/chempy/mmd.py
/usr/lib/python3.10/site-packages/chempy/mmtf
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/usr/lib/python3.10/site-packages/chempy/protein_mmff.py
/usr/lib/python3.10/site-packages/chempy/protein_residues.py
/usr/lib/python3.10/site-packages/chempy/sdf.py
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Fabrice Bellet, Wed Jun 26 23:21:53 2024