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python39-nibabel-4.0.2-1.6 RPM for noarch

From OpenSuSE Ports Tumbleweed for noarch

Name: python39-nibabel Distribution: openSUSE:Factory:zSystems
Version: 4.0.2 Vendor: openSUSE
Release: 1.6 Build date: Thu Jun 15 21:46:29 2023
Group: Unspecified Build host: s390zl21
Size: 69523241 Source RPM: python-nibabel-4.0.2-1.6.src.rpm
Packager: https://bugs.opensuse.org
Url: https://nipy.org/nibabel
Summary: Tool to access multiple neuroimaging data formats
 
This package provides read +/- write access to some common medical and
neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and
later), GIFTI, NIfTI1, NIfTI2, CIFTI-2, MINC1, MINC2, AFNI BRIK/HEAD,
MGH and ECAT as well as Philips PAR/REC. We can read and write
FreeSurfer geometry, annotation and morphometry files. There is some
very limited support for DICOM.

Provides

Requires

License

MIT

Changelog

* Thu Oct 06 2022 Markéta Machová <mmachova@suse.com>
  - Update to 4.0.2
    * many changes, see Changelog
    * nib-convert CLI tool to make image type and data dtype conversion
      accessible via the command line.
    * Allow dtypes to be passed to Analyze-like images at __init__()
      and to_filename()
    * Allow compressed GIFTI images
    * Add zstd compression support
    * Test on Python 3.10
    * Passing (u)int64 arrays to Nifti1Image and subclasses will warn
      unless a header or dtype option is passed; in the future this will
      become an error. Additionally, passing int or 'int' to set_data_dtype()
      now raises an error, requiring an explicit numpy dtype to make 64-bit
      integer images.
    * Drop support for Python 3.6, Numpy < 1.17
    * Fully removed the APIs, which have raised errors on use since 3.0
  - Drop upstreamed 983.patch and purge-nose.patch
* Wed Mar 31 2021 Guillaume GARDET <guillaume.gardet@opensuse.org>
  - Add upstream patch to fix test on Backports:SLE-15-SP3:
    * 983.patch
* Fri Feb 12 2021 Dirk Müller <dmueller@suse.com>
  - skip python 36
* Fri Jul 10 2020 Marketa Calabkova <mcalabkova@suse.com>
  - Update to 3.1.1
    * Conformation function (``processing.conform``) and CLI tool
      (``nib-conform``) to apply shape, orientation and zooms (pr/853) (Jakub
      Kaczmarzyk, reviewed by CM, YOH)
    * Affine rescaling function (``affines.rescale_affine``) to update
      dimensions and voxel sizes (pr/853) (CM, reviewed by Jakub Kaczmarzyk)
    * ``kw_only_meth``/``kw_only_func`` decorators are deprecated (pr/848)
      (RM, reviewed by CM)
  - Add patch purge-nose.patch
* Thu May 21 2020 Petr Gajdos <pgajdos@suse.com>
  - %python3_only -> %python_alternative
* Fri Mar 06 2020 Tomáš Chvátal <tchvatal@suse.com>
  - Update to 3.0.1:
    * Test failed by using array method on tuple. (pr/860) (Ben Darwin, reviewed by CM)
    * Validate ExpiredDeprecationErrors, promoted by 3.0 release from DeprecationWarnings. (pr/857) (CM)
    * Improve testing of data scaling in ArrayProxy API (pr/847) (CM, reviewed by Alejandro de la Vega)
    * Document SpatialImage.slicer interface (pr/846) (CM)
    * get_fdata(dtype=np.float32) will attempt to avoid casting data to np.float64 when scaling parameters would otherwise promote the data type unnecessarily. (pr/833) (CM, reviewed by Ross Markello)
    * ArraySequence now supports a large set of Python operators to combine or update in-place. (pr/811) (MC, reviewed by Serge Koudoro, Philippe Poulin, CM, MB)
    * Warn, rather than fail, on DICOMs with unreadable Siemens CSA tags (pr/818) (Henry Braun, reviewed by CM)
    * Improve clarity of coordinate system tutorial (pr/823) (Egor Panfilov, reviewed by MB)
* Tue Nov 19 2019 Todd R <toddrme2178@gmail.com>
  - Update to version 2.5.1
    + Enhancements
    * Ignore endianness in ``nib-diff`` if values match
    + Bug fixes
    * Correctly handle Philips DICOMs w/ derived volume
    * Raise CSA tag limit to 1000, parametrize for future relaxing
    * Coerce data types to match NIfTI intent codes when writing GIFTI data
      arrays
    + Maintenance
    * Require h5py 2.10 for Windows + Python < 3.6 to resolve unexpected dtypes
      in Minc2 data
    + API changes and deprecations
    * Deprecate ``nicom.dicomwrappers.Wrapper.get_affine()`` in favor of ``affine``
      property; final removal in nibabel 4.0
  - Update to version 2.5.0
    + Enhancements
    * Add SerializableImage class with to/from_bytes methods
    * Check CIFTI-2 data shape matches shape described by header
    + Bug fixes
    * Handle stricter numpy casting rules in tests
    * TRK header fields flipped in files written on big-endian systems
    * Load multiframe ECAT images with Python 3
    + Maintenance
    * Fix CodeCov paths on Appveyor for more accurate coverage
    * Move to setuptools and reduce use ``nisext`` functions
    * Better handle test setup/teardown
    + API changes and deprecations
    * Effect threatened warnings and set some deprecation timelines
    * Trackvis methods now default to v2 formats
    * ``nibabel.trackvis`` scheduled for removal in nibabel 4.0
    * ``nibabel.minc`` and ``nibabel.MincImage`` will be removed in nibabel 3.0
  - Drop upstream-included fix_numpy_1_17.patch
* Mon Jul 29 2019 Todd R <toddrme2178@gmail.com>
  - Add fix_numpy_1_17.patch to fix building with numpy 1.17.0
    From: gh#/nipy/nibabel#768
* Fri Jul 26 2019 Todd R <toddrme2178@gmail.com>
  - Initial version

Files

/etc/alternatives/nib-conform
/etc/alternatives/nib-convert
/etc/alternatives/nib-dicomfs
/etc/alternatives/nib-diff
/etc/alternatives/nib-ls
/etc/alternatives/nib-nifti-dx
/etc/alternatives/nib-roi
/etc/alternatives/nib-stats
/etc/alternatives/nib-tck2trk
/etc/alternatives/nib-trk2tck
/etc/alternatives/parrec2nii
/usr/bin/nib-conform
/usr/bin/nib-conform-3.9
/usr/bin/nib-convert
/usr/bin/nib-convert-3.9
/usr/bin/nib-dicomfs
/usr/bin/nib-dicomfs-3.9
/usr/bin/nib-diff
/usr/bin/nib-diff-3.9
/usr/bin/nib-ls
/usr/bin/nib-ls-3.9
/usr/bin/nib-nifti-dx
/usr/bin/nib-nifti-dx-3.9
/usr/bin/nib-roi
/usr/bin/nib-roi-3.9
/usr/bin/nib-stats
/usr/bin/nib-stats-3.9
/usr/bin/nib-tck2trk
/usr/bin/nib-tck2trk-3.9
/usr/bin/nib-trk2tck
/usr/bin/nib-trk2tck-3.9
/usr/bin/parrec2nii
/usr/bin/parrec2nii-3.9
/usr/lib/python3.9/site-packages/nibabel
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/usr/lib/python3.9/site-packages/nibabel-4.0.2-py3.9.egg-info/SOURCES.txt
/usr/lib/python3.9/site-packages/nibabel-4.0.2-py3.9.egg-info/dependency_links.txt
/usr/lib/python3.9/site-packages/nibabel-4.0.2-py3.9.egg-info/entry_points.txt
/usr/lib/python3.9/site-packages/nibabel-4.0.2-py3.9.egg-info/not-zip-safe
/usr/lib/python3.9/site-packages/nibabel-4.0.2-py3.9.egg-info/requires.txt
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Fabrice Bellet, Sun Feb 23 00:14:44 2025