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Name: python313-scikit-image | Distribution: openSUSE:Factory:zSystems |
Version: 0.25.0 | Vendor: openSUSE |
Release: 1.2 | Build date: Mon Dec 16 08:09:20 2024 |
Group: Unspecified | Build host: reproducible |
Size: 34895879 | Source RPM: python-scikit-image-0.25.0-1.2.src.rpm |
Packager: https://bugs.opensuse.org | |
Url: https://scikit-image.org/ | |
Summary: Collection of algorithms for image processing in Python |
Scikit-image is a collection of algorithms for image processing in Python. It is available free of charge and free of restriction.
BSD-3-Clause
* Mon Dec 16 2024 Steve Kowalik <steven.kowalik@suse.com> - Update to 0.25.0: * New Features + Add the new Gray-Level Co-occurrence Matrix (GLCM) properties "mean", "variance", "standard deviation" and "entropy" to skimage.feature.texture.graycoprops (#7375). + Add the new skimage.morphology.footprint_rectangle supporting generation of rectangular or hyper-rectangular footprints in one function (#7566). * API Changes + Complete the deprecation of and remove skimage.feature.plot_matches. Use skimage.feature.plot_matched_features going forward (#7487). + Deprecate skimage.io.imshow, skimage.io.imshow_collection and skimage.io.show. Please use matplotlib, napari, etc. to visualize images (#7508). + Remove deprecated skimage.morphology.skeletonize_3d; use skimage.morphology.skeletonize instead (#7572). + Deprecate skimage.io plugin infrastructure (#7353). + Switched to using the scipy.sparse array interface. For more details, see the note about the new scipy.sparse array interface here (#7576). + Deprecate skimage.morphology.rectangle in favor of the new function skimage.morphology.footprint_rectangle (#7566). + Deprecate skimage.morphology.square in favor of the new function skimage.morphology.footprint_rectangle (#7566). + Deprecate skimage.morphology.cube in favor of the new function skimage.morphology.footprint_rectangle (#7566). * Enhancements + Improve numerical stability of skimage.morphology.local_minima for extremely small floats (#7534). + Make sure that skimage.feature.plot_matched_features uses the same random colors, if matches_color isn't provided explicitly (#7541). + Allow passing a sequence of colors to the parameter matches_color in skimage.feature.plot_matched_features (#7541). * Performance + skimage.feature.peak_local_max will now skip unnecessary distance computations in the case of min_distance=1. This results in performance improvements to functions like skimage.feature.blob_dog, skimage.feature.blob_log, skimage.feature.blob_doh and skimage.feature.corner_peaks that call peak_local_max internally (#7548). + In skimage.featurepeak_local_max, skip unnecessary check for cases where min_distance > 1 is passed (#7548). * Bug Fixes + Ensure that skimage.morphology.remove_objects_by_distance doesn't fail if the given integer dtype cannot be safely cast to the architecture specific size of intp, e.g. on i386 architectures (#7453). + Fix degeneracy in skimage.draw.ellipsoid_stats when all semi-axes have the same length (#7473). + Prevent skimage.morphology.thin from accidentally modifying the input image in case it is of dtype uint8 (#7469). + Fix numerical precision error in skimage.measure.ransac. In some cases, ransac was stopping at the first iteration (#7065). + Fix numerical precision error in skimage.measure.ransac; very small probabilities lead to -0 number of max trials (#7496). + Ensure that RegionProperties objects returned by skimage.measure.regionprops can be deserialized with pickle (#7569). + Fix edge case where setting watershed_lines=True in skimage.segmentation.watershed resulted in an incorrect solution (#7071). + Fix the behavior of skimage.segmentation.watershed when the markers don't align with local minima by making sure every marker is evaluated before successive pixels (#7071). + Fix dtype promotion in skimage.segmentation.join_segmentations if numpy.uint is used with NumPy<2 (#7292). * Maintenance + Set -DNPY_NO_DEPRECATED_API=NPY_1_23_API_VERSION on build (#7538). + Don't use deprecated io.show and io.imshow (#7556). + Drop Python 3.9 support (#7561). + Support Python 3.13 (#7565). + Remove deprecated gaussian output parameter (#7574). * Mon Dec 02 2024 Ben Greiner <code@bnavigator.de> - Not ready for python313 yet: gh#scikit-image/scikit-image#7585 * Fri Nov 15 2024 Ben Greiner <code@bnavigator.de> - Fix tests * Avoid random test collection order for np types gh#pytest-dev/pytest-xdist#432 * Disable dask test gh#scikit-image/scikit-image#7491 * Wed Jul 17 2024 Ben Greiner <code@bnavigator.de> - Revert. Numpy 2 is supported. * Wed Jul 17 2024 Steve Kowalik <steven.kowalik@suse.com> - Restrict numpy to < 2 for now. * Wed Jun 26 2024 John Paul Adrian Glaubitz <adrian.glaubitz@suse.com> - Update to 0.24.0 [#]# Highlights * Add new class ``skimage.transform.ThinPlateSplineTransform``, which can estimate and model non-linear transforms with thin-plate splines and allows image warping with ``skimage.transform.warp`` (#7040) [#]# New Features * Add new class ``skimage.transform.ThinPlateSplineTransform``, which can estimate and model non-linear transforms with thin-plate splines and allows image warping with ``skimage.transform.warp`` (#7040) * Add ``skimage.morphology.remove_objects_by_distance``, which removes labeled objects, ordered by size (default), until the remaining objects are a given distance apart (#4165) [#]# Performance * In ``skimage.feature.corner_fast``, test four directions earlier, which should more than half the computation time for most cases (#7394) [#]# Documentation * Remove obsolete instruction about documenting changes (#7321) * Clarify description of ``data_range`` parameter in ``skimage.metrics.structural_similarity`` (#7345) * Update release process notes (#7402) * Fix typo in docstring of ``skimage.measure.regionprops`` (#7405) * Fix typos in ``skimage.measure.find_contours`` (#7411) * Add algorithmic complexity description + suggested alternatives to ``skimage.restoration.rolling_ball`` docstring (#7424) * Remove ineffective PR contribution clause (#7429) * Clarify objection period for lazy consensus in SKIP 1 (#7020) * Add a new gallery example "Use thin-plate splines for image warping" (#7040) * Add a new gallery example on "Removing objects" based on their size or distance (#4165) [#]# Infrastructure * Escape user-controlled variables in GA workflow (#7415) * Add generation of GitHub artifact attestations to built sdist and wheels before upload to PyPI (#7427) * For publishing actions use the full length commit SHA (#7433) * Be mindful of resources by canceling in-progress workflows (#7436) * Add out-of-tree Pyodide builds in CI for ``scikit-image`` (#7350) [#]# Maintenance * Replace deprecated nose style setup/teardown with autouse fixtures (#7343) * Temporarily pin macos-12 runner in CI (#7408) * Fix NumPy2 dtype promotion issues in pywt dependent code (#7414) * In ``skimage.util.compare_images``, deprecate the parameter ``image2``. Instead use ``image0``, ``image1`` to pass the compared images. Furthermore, all other parameters will be turned into keyword-only parameters once the deprecation is complete (#7322) * Add support back for Python 3.9 to enhance compatibility with Numpy 2 (#7412) * Disable ruff/pyupgrade rule UP038 (#7430) * Stop verifying wheel attestations temporarily (#7444) - Drop patches for issues fixed upstream * skimage-pr7414-np2.patch * Thu Jun 06 2024 Ben Greiner <code@bnavigator.de> - Add skimage-pr7414-np2.patch gh#scikit-image/scikit-image#7414 * Sun May 05 2024 Ben Greiner <code@bnavigator.de> - Update to 0.23.2 [#]# Bug Fixes * Make sure skimage.util.img_as_ubyte supports the edge case where dtype('uint64').type of the provided image is np.ulonglong instead of np.uint64 (#7392). [#]# Documentation * Add date to 0.23.1 release notes (#7384). * Fix docstring of connectivity parameter in skimage.segmentation.watershed (#7360). [#]# Infrastructure * Ignore Sphinx warning about unpickable cache (#7400). * Simplify instructions on changelist in PR template (#7401). [#]# Maintenance * Use numpy.inf instead of deprecated numpy.infty (#7386). * Update Ruff config (#7387). * Update matrix and names of Azure pipelines configuration (#7390). * Use upload- and download-artifact v4 (#7389). * Ignore arch specific cast warnings originating from astype in tests (#7393). * Update link to numpydoc example.py (#7395). - Release 0.23.1/0.23.0 [#]# Highlights * Ensure skimage.morphology.closing and skimage.morphology.opening are extensive and anti-extensive, respectively, if the footprint is not mirror symmetric (#6695). * Add parameter mode to binary_erosion, binary_dilation, binary_opening and binary_closing in skimage.morphology. These new parameters determine how array borders are handled (#6695). * Add parameters mode and cval to erosion, dilation, opening, closing, white_tophat, and black_tophat in skimage.morphology. These new parameters determine how array borders are handled (#6695). * Speedup skimage.util.map_array by parallelization with Cython's prange (#7266). [#]# New Features * Add new intensity_std property to skimage.measure.regionprops which computes the standard deviation of the intensity in a region (#6712). * Add parameter mode to binary_erosion, binary_dilation, binary_opening and binary_closing in skimage.morphology. These new parameters determine how array borders are handled (#6695). * Add functions mirror_footprint and pad_footprint to skimage.morphology (#6695). * Add parameters mode and cval to erosion, dilation, opening, closing, white_tophat, and black_tophat in skimage.morphology. These new parameters determine how array borders are handled (#6695). * Add new parameter spacing to segmentation.expand_labels to support anisotropic images (#7080). [#]# API Changes * Drop support for Python 3.9 (#7217). * Parameters shift_x and shift_y in skimage.morphology.erosion and skimage.morphology.dilation are deprecated. Use pad_footprint or modify the footprint manually instead (#6695). * Remove unexpected value scaling in skimage.morphology.skeletonize_3d for non-binary input images. skeletonize_3d now always returns a binary array like similar functions (#7095). * Deprecate function skimage.feature.plot_matches in favor of skimage.feature.plot_matched_features (#7255). * Deprecate skimage.morphology.skeletonize_3d in favor of just skimage.morphology.skeletonize (#7094). * Deprecate parameter output in skimage.filters.gaussian; use out instead (#7225). * Change the default value of the parameters shift_x, shift_y and shift_z from False to 0 in the skimage.filters.rank functions. This has not impact on the results. Warn in case boolean shifts are provided from now on (#7320). * Performance * Add lazy loading to skimage.metrics module (#7211). * Speedup skimage.util.map_array by parallelization with Cython's prange (#7266). [#]# Bug Fixes * Add exception to avoid surprising result when image is too small for the given parameters in skimage.feature.hog (#7153). * Ensure skimage.morphology.closing and skimage.morphology.opening are extensive and anti-extensive, respectively, if the footprint is not mirror symmetric (#6695). * Avoid a TypeError in skimage.registration.phase_cross_correlation when the real-time shift cannot be determined (disambiguate=True). Display a warning instead (#7259). * Fix logic in skimage.graph.pixel_graph which raised a TypeError when the parameter edge_function was provided without a mask (#7310). * Ensure cache stays empty when cache=False is passed to skimage.measure.regionprops (#7333). * Sat Mar 16 2024 Atri Bhattacharya <badshah400@gmail.com> - Update to version 0.22.0: * Long list of changes, see https://scikit-image.org/docs/stable/release_notes/release_0.22.html - Drop upstreamed patches * np-warn.patch * skimage-numpy125.patch - Enable no longer failing tests. * Tue Aug 22 2023 Markéta Machová <mmachova@suse.com> - Add upstream patches np-warn.patch and skimage-numpy125.patch to fix build with NumPy 1.25 * Thu Jul 06 2023 Atri Bhattacharya <badshah400@gmail.com> - Update to version 0.21.0 * Too many changes to list, see https://github.com/scikit-image/scikit-image/releases/tag/v0.21.0 - Update minimum versions of Requires/BuildRequires in keeping with upstream. - Use pyproject_* macros to build and install since there is no setup.py any more. - Drop skimage-fix-module-install.patch: fixed upstream. - Fix some hashbangs before build. - New Requires: python-lazy-loader. - Set PYTEST_DEBUG_TEMPROOT to a tmp dir created within the working dir as tests now require it to be writable. - Some more tests disabled due to flaky floating point issues. * Fri Jul 01 2022 Ben Greiner <code@bnavigator.de> - Update to 0.19.3 * Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again) * Fix corner case with an optimal angle of 0 degrees in hough_line_peaks * Fixed the gallery example involving registration with log-polar transformations * Update test suite for compatibility with the most recent tifffile release. * warp/rotate: fixed a bug with clipping when cval is not in the input range * Fix computation of histogram bins for multichannel integer-valued images * Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5. * Update skimage.io.imread to avoid warnings when using imageio>=2.16.2. * Now compatible with Pillow >= 9.1 (palette may contain <256 entries) * Added support for NumPy 1.23 - Release 0.19.2 * This is primarily a bug fix release, although there is one new gallery example related to detection of fluorescence at the nuclear envelope of mammalian cells. - Release 0.19.1 * This is a small bug fix release that resolves a couple of backwards compatibility issues. - Release 0.19.0 * A highlight of this release is the addition of the popular scale-invariant feature transform (SIFT) feature detector and descriptor. This release also introduces a perceptual blur metric, new pixel graph algorithms, and most functions now operate in single-precision when single-precision inputs are provided. Many other bug fixes, enhancements and performance improvements are detailed below. * A significant change in this release is in the treatment of multichannel images. The existing multichannel argument to functions has been deprecated in favor of a new channel_axis argument. channel_axis can be used to specify which axis of an array contains channel information (with channel_axis=None indicating a grayscale image). * scikit-image now uses "lazy loading", which enables users to access the functions from all skimage submodules without the overhead of eagerly importing all submodules. As a concrete example, after calling "import skimage" a user can directly call a function such as skimage.transform.warp whereas previously it would have been required to first "import skimage.transform". * An exciting change on the development side is the introduction of support for Pythran as an alternative to Cython for generating compiled code. We plan to keep Cython support as well going forward, so developers are free to use either one as appropriate. For those curious about Pythran, a good overview was given in the SciPy 2021 presentation, "Building SciPy Kernels with Pythran" (https://www.youtube.com/watch?v=6a9D9WL6ZjQ). * This release now supports Python 3.7-3.10. - Release 0.18.3 * This is a small bugfix release for compatibility with Pooch 1.5 and SciPy 1.7. - Release 0.18.2 * This release fixes a couple of minor bugs. - Add skimage-fix-module-install.patch * gh#scikit-image/scikit-image#6428
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