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| Name: hdf5_1_14_6-hpc-examples | Distribution: openSUSE Tumbleweed |
| Version: 1.14.6 | Vendor: openSUSE |
| Release: 1.1 | Build date: Wed Mar 5 17:09:27 2025 |
| Group: Documentation/Other | Build host: reproducible |
| Size: 16394367 | Source RPM: hdf5_1_14_6-gnu-hpc-1.14.6-1.1.src.rpm |
| Packager: https://bugs.opensuse.org | |
| Url: https://www.hdfgroup.org/HDF5/ | |
| Summary: Examples for hdf5_1_14_6-gnu-hpc | |
HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes. This package provides examples of HDF5 library use.
BSD-3-Clause
* Wed Mar 05 2025 Atri Bhattacharya <badshah400@gmail.com>
- Update to version 1.14.6:
* Reverted a change (from v1.14.4) to the library's handling of
UTF-8 file names.
* Updated CMake find_package(ZLIB) defaults to find most system
zlib installs.
- Changes from versions 1.14.0 through 1.14.5:
* See %{_docdir}/hdf5/HISTORY-1_14.txt or online at
https://github.com/HDFGroup/hdf5/blob/hdf5_1.14.6/release_docs/HISTORY-1_14.txt
- Build hdf5 tools lib and split out as separate shared lib.
- Disable static libs. Note: If we need to re-enable this, we will
have to do it as part of separate flavours and strip all cmake
configuration files from the -devel-static package. Otherwise,
we will need to BuildRequires: hdf5-devel-static for every
package even if only the shared lib is required, because the
cmake module will contain references to both shared and static
libs and not having the latter will cause find_package(HDF5) to
fail.
- Enable tests and run them as part of %check.
- Pass regexs to cmake option `DHDF5_DISABLE_TESTS_REGEX` to
disable failing tests, including:
* MPI tests that take a long time to run (on all archs).
* Tests failing on specific archs.
- Drop helper scripts `so_versions` and `update_so_version.sh` to
simplify so versioning usage; hdf5 is now consistent with their
so numbers across different libraries.
- Add hdf5.rpmlintrc file to suppress false positives reported by
rpmlint.
- Add hdf5-cmake-fix-script-paths.patch -- Fix paths in scripts
when built using cmake [gh#HDFGroup/hdf5#5361].
- Move h5hl* compiler wrappers to -devel package.
- Drop patches that have been incorporated upstream directly or
otherwise fixed:
* hdf5-LD_LIBRARY_PATH.patch (not needed after switch to cmake)
* hdf5-Remove-timestamps-from-binaries.patch
* hdf5-mpi.patch (was already disabled since v1.12)
* Disable-phdf5-tests.patch (test runs fine now)
* Fix-error-message-not-the-name-but-the-link-information-is-parsed.patch
* H5O_fsinfo_decode-Make-more-resilient-to-out-of-bounds-read.patch
* Report-error-if-dimensions-of-chunked-storage-in-data-layout-2.patch
* When-evicting-driver-info-block-NULL-the-corresponding-entry.patch
* Validate-location-offset-of-the-accumulated-metadata-when-comparing.patch
* Hot-fix-for-CVE-2020-10812.patch
* reproducible.patch
* hdf5-wrappers.patch (autotools specific, no longer used)
* Mon Feb 03 2025 Bernhard Wiedemann <bwiedemann@suse.com>
- Add reproducible.patch to drop date+hostname from build results
(boo#1047218, boo#1084909)
* Mon May 13 2024 Atri Bhattacharya <badshah400@gmail.com>
- Update to version 1.12.3:
* Bumped the minimum required version of Autoconf to 2.71.
* Added new option to build libaec and zlib inline with CMake.
* Changed the error handling for a not found path in the find
plugin process.
* Removed "-commons" linking option to fix a compile error on
MacOS Sonoma that resulted in build failure.
* Doxygen User Guide documentation can be configured and
generated.
- Minor patch rebase for updated version:
* Disable-phdf5-tests.patch
* Fix-error-message-not-the-name-but-the-link-information-is-parsed.patch
* H5O_fsinfo_decode-Make-more-resilient-to-out-of-bounds-read.patch
* Hot-fix-for-CVE-2020-10812.patch
* PPC64LE-Fix-long-double-handling.patch
* Report-error-if-dimensions-of-chunked-storage-in-data-layout-2.patch
* Validate-location-offset-of-the-accumulated-metadata-when-comparing.patch
* When-evicting-driver-info-block-NULL-the-corresponding-entry.patch
* hdf5-1.8.11-abort_unknown_host_config.patch
* hdf5-LD_LIBRARY_PATH.patch
* hdf5-Remove-timestamps-from-binaries.patch
* hdf5-wrappers.patch
- Drop upstreamed patches:
* Remove-duplicate-code.patch
* H5O__pline_decode-Make-more-resilient-to-out-of-bounds-read.patch
* H5O_dtype_decode_helper-Parent-of-enum-needs-to-have-same-size-as-enum-itself.patch
* Pass-compact-chunk-size-info-to-ensure-requested-elements-are-within-bounds.patch
* Make-sure-info-block-for-external-links-has-at-least-3-bytes.patch
* Compound-datatypes-may-not-have-members-of-size-0.patch
* H5IMget_image_info-H5Sget_simple_extent_dims-does-not-exceed-array-size.patch
* Check-for-overflow-when-calculating-on-disk-attribute-data-size-2459.patch
- New BuildRequires: hostname.
- Work around an sed hack in upstream configure file by dropping
"-Werror=return-type" from RPM %optflags.
* Wed Mar 20 2024 Atri Bhattacharya <badshah400@gmail.com>
- Work around bot rejection for unapplied Patch7.
* Thu Feb 22 2024 Dominique Leuenberger <dimstar@opensuse.org>
- Use %patch -P N instead of deprecated %patchN.
* Fri Feb 02 2024 Atri Bhattacharya <badshah400@gmail.com>
- Add openmpi5 and gnu-hpc-openmpi5 flavours.
* Mon Oct 23 2023 Nicolas Morey <nicolas.morey@suse.com>
- Drop support for obsolete openmpi[123]
- Prepare support for openmpi5
* Mon Feb 13 2023 Egbert Eich <eich@suse.com>
- Fix CVE-2021-37501 - overflow in calculation of data buffer due to bogus
input file (bsc#1207973).
https://github.com/HDFGroup/hdf5/issues/2458
https://github.com/HDFGroup/hdf5/pull/2459
Check-for-overflow-when-calculating-on-disk-attribute-data-size-2459.patch
Remove-duplicate-code.patch
* Tue Nov 15 2022 Atri Bhattacharya <badshah400@gmail.com>
- Add to specfile missing patch:
Fix-error-message-not-the-name-but-the-link-information-is-parsed.patch
* Sat Oct 15 2022 Egbert Eich <eich@suse.com>
- Fix CVEs:
* CVE-2021-46244 (bsc#1195215)
Compound-datatypes-may-not-have-members-of-size-0.patch
* CVE-2018-13867 (bsc#1101906)
Validate-location-offset-of-the-accumulated-metadata-when-comparing.patch
* CVE-2018-16438 (bsc#1107069)
Make-sure-info-block-for-external-links-has-at-least-3-bytes.patch
* CVE-2020-10812 (bsc#1167400)
Hot-fix-for-CVE-2020-10812.patch
* CVE-2021-45830 (bsc#1194375)
H5O_fsinfo_decode-Make-more-resilient-to-out-of-bounds-read.patch
* CVE-2019-8396 (bsc#1125882)
H5O__pline_decode-Make-more-resilient-to-out-of-bounds-read.patch
* CVE-2018-11205 (bsc#1093663)
Pass-compact-chunk-size-info-to-ensure-requested-elements-are-within-bounds.patch
* CVE-2021-46242 (bsc#1195212)
When-evicting-driver-info-block-NULL-the-corresponding-entry.patch
* CVE-2021-45833 (bsc#1194366)
Report-error-if-dimensions-of-chunked-storage-in-data-layout-2.patch
* CVE-2018-14031 (bsc#1101475)
H5O_dtype_decode_helper-Parent-of-enum-needs-to-have-same-size-as-enum-itself.patch
* CVE-2018-17439 (bsc#1111598)
H5IMget_image_info-H5Sget_simple_extent_dims-does-not-exceed-array-size.patch
- Fix an error message:
Fix-error-message-not-the-name-but-the-link-information-is-parsed.patch
* Wed Sep 21 2022 Stefan Brüns <stefan.bruens@rwth-aachen.de>
- Remove timestamp/buildhost/kernel version from libhdf5.settings (boo#1209548).
* Wed Jul 27 2022 Atri Bhattacharya <badshah400@gmail.com>
- Update to version 1.12.2:
See <https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.2/src/hdf5-1.12.2-RELEASE.txt>.
- Minor re-base of existing patches to apply cleanly:
* hdf5-LD_LIBRARY_PATH.patch
* hdf5-1.8.11-abort_unknown_host_config.patch
* hdf5-Remove-timestamps-from-binaries.patch
* hdf5-mpi.patch
* Disable-phdf5-tests.patch
- Drop upstreamed patch:
hdf5-1.10.8-pr1494-fix-release-check-version.patch.
* Wed May 04 2022 Egbert Eich <eich@suse.com>
- Security Fix:
Add configure option --disable-hltools to disable GIF tools as
recommended in the 1.10.8 release:
CVE-2018-17433 (bsc#1109565),
CVE-2018-17436 (bsc#1109568),
CVE-2020-10809 (bsc#1167404).
* Thu Apr 07 2022 Christoph Junghans <junghans@votca.org>
- add hdf5-wrappers.patch from Fedora, so strip flags from
wrappers and prefer shared linking
- add missing zlib-devel devel dep
* Thu Mar 31 2022 Ben Greiner <code@bnavigator.de>
- Add hdf5-1.10.8-pr1494-fix-release-check-version.patch
* boo#1179521, boo#1196682, gh#HDFGroup/hdf5#1494
* Avoids package crashes due to an overeager version check.
Packages depending on the shared libraries are not being
rebuilt in Factory after a patchlevel version bump of hdf5
without SONAME changes.
* Wed Feb 16 2022 Atri Bhattacharya <badshah400@gmail.com>
- Update to version 1.10.8:
* Added new option to control the build of High-Level tools
* Adds C++ Autotools configuration file for Intel
* Adds C++ Autotools configuration file for PGI
* Updates PGI C options
* CMake will now run the shell script tests in test/ by default
* Removed unused HDF5_ENABLE_HSIZET option from CMake
* CMake no longer builds the C++ library by default
* Removal of pre-VS2015 work-arounds
* Add CMake variable HDF5_LIB_INFIX
* Added a configure-time option to control certain compiler
warnings
* CMake option to build the HDF filter plugins project as an
external project
* Added a configure-time option to consider certain compiler
warnings
* Autotools and CMake target added to produce doxygen generated
documentation
* CMake option to build the HDF filter plugins project as an
external project
* Added CMake option to format source files
* Change how the release part of version, in major.minor.release
is checked
* H5Gcreate1() now rejects size_hint parameters larger than
UINT32_MAX
* H5Pset_fapl_log() no longer crashes when passed an invalid
fapl ID
* Fixes a segfault when H5Pset_mdc_log_options() is called
multiple times
* File locking now works on Windows
* H5Epush_ret() now requires a trailing semicolon
* Improved performance of H5Sget_select_elem_pointlist
* H5Fget_name_f fixed to handle correctly trailing whitespaces
and newly allocated buffers.
* Added new H5S functions.
* Refactored the perform tools and removed dependencies on test
library.
* h5repack added help text for user-defined filters.
* Doxygen documentation is available when configured and
generated.
* Fixed CVE-2018-17432 (bsc#1109564)
* Fixed a segmentation fault
* Detection of simple data transform function "x"
* Fixed CVE-2020-10810 - an invalid read and memory leak when
parsing (bsc#1167401)
* Fixed CVE-2018-14460 (bsc#1102175)
* Fixed CVE-2018-11206 (bsc#1093657)
(same issue as CVE-2018-14032 (bsc#1101474))
* Fixed CVE-2018-14033 (bsc#1101471)
(same issue as CVE-2020-10811 (bsc#1167405))
* Remove underscores on header file guards
* H5FArray.java class:
- Convert the entire byte array into a 1-d array of the
desired type, rather than performing 1 conversion per row;
- Use the Java Arrays method copyOfRange to grab the section
of the array from (1) that is desired to be inserted into
the destination array.
* Corrected path searched by CMake find_package command
* Corrected pkg-config compile script
* Fixed CMake C++ compiler flags
* Autotools clang debug optimization level change
* Better support for libaec (open-source Szip library) in CMake
* Refactor CMake configure for Fortran
* Remove arbitrary warning flag groups from CMake builds
* Reclassify CMake messages, to allow new modes and --log-level
option
* Fixes Autotools determination of the stat struct having an
st_blocks field
* Changed how h5dump and h5ls identify long double.
* Fixed tools argument parsing.
* Updated doxygen comments with changes for release
- Minor rebase of patches to apply cleanly.
/usr/share/hdf5_examples /usr/share/hdf5_examples/1.14.6 /usr/share/hdf5_examples/1.14.6/C /usr/share/hdf5_examples/1.14.6/C/CMakeLists.txt /usr/share/hdf5_examples/1.14.6/C/H5D /usr/share/hdf5_examples/1.14.6/C/H5D/16 /usr/share/hdf5_examples/1.14.6/C/H5D/16/h5ex_d_alloc.c /usr/share/hdf5_examples/1.14.6/C/H5D/16/h5ex_d_checksum.c /usr/share/hdf5_examples/1.14.6/C/H5D/16/h5ex_d_chunk.c /usr/share/hdf5_examples/1.14.6/C/H5D/16/h5ex_d_compact.c /usr/share/hdf5_examples/1.14.6/C/H5D/16/h5ex_d_extern.c /usr/share/hdf5_examples/1.14.6/C/H5D/16/h5ex_d_fillval.c /usr/share/hdf5_examples/1.14.6/C/H5D/16/h5ex_d_gzip.c /usr/share/hdf5_examples/1.14.6/C/H5D/16/h5ex_d_hyper.c /usr/share/hdf5_examples/1.14.6/C/H5D/16/h5ex_d_rdwr.c /usr/share/hdf5_examples/1.14.6/C/H5D/16/h5ex_d_shuffle.c /usr/share/hdf5_examples/1.14.6/C/H5D/16/h5ex_d_szip.c /usr/share/hdf5_examples/1.14.6/C/H5D/16/h5ex_d_unlimadd.c /usr/share/hdf5_examples/1.14.6/C/H5D/16/h5ex_d_unlimgzip.c /usr/share/hdf5_examples/1.14.6/C/H5D/16/h5ex_d_unlimmod.c /usr/share/hdf5_examples/1.14.6/C/H5D/CMakeLists.txt /usr/share/hdf5_examples/1.14.6/C/H5D/C_sourcefiles.cmake /usr/share/hdf5_examples/1.14.6/C/H5D/Makefile.am /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_alloc.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_checksum.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_chunk.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_compact.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_extern.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_fillval.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_gzip.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_hyper.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_nbit.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_rdwr.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_shuffle.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_sofloat.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_soint.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_szip.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_transform.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_unlimadd.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_unlimgzip.c /usr/share/hdf5_examples/1.14.6/C/H5D/h5ex_d_unlimmod.c /usr/share/hdf5_examples/1.14.6/C/H5D/test-pc.sh /usr/share/hdf5_examples/1.14.6/C/H5D/test.sh.in /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/110 /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/110/h5ex_d_nbit07.ddl /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16 /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_alloc.ddl /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_alloc.tst /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_checksum.ddl /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_checksum.tst /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_chunk.ddl /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_chunk.tst /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_compact.ddl /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_compact.tst /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_extern.ddl /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_extern.tst /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_fillval.ddl /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_fillval.tst /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_gzip.ddl /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_gzip.tst /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_hyper.ddl /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_hyper.tst /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_rdwr.ddl /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_rdwr.tst /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_shuffle.ddl /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_shuffle.tst /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_szip.ddl /usr/share/hdf5_examples/1.14.6/C/H5D/tfiles/16/h5ex_d_szip.tst 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Fabrice Bellet, Thu Apr 3 23:25:58 2025