MueLu
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Factory to export aggregation info or visualize aggregates using VTK. More...
#include <MueLu_AggregationExportFactory_fwd.hpp>
Public Member Functions | |
RCP< const ParameterList > | GetValidParameterList () const |
Return a const parameter list of valid parameters that setParameterList() will accept. More... | |
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TwoLevelFactoryBase () | |
Constructor. More... | |
virtual | ~TwoLevelFactoryBase () |
Destructor. More... | |
virtual void | CallDeclareInput (Level &requestedLevel) const |
virtual void | CallBuild (Level &requestedLevel) const |
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void | EnableMultipleCallCheck () const |
void | DisableMultipleCallCheck () const |
void | ResetDebugData () const |
Factory () | |
Constructor. More... | |
virtual | ~Factory () |
Destructor. More... | |
virtual void | SetFactory (const std::string &varName, const RCP< const FactoryBase > &factory) |
Configuration. More... | |
const RCP< const FactoryBase > | GetFactory (const std::string &varName) const |
Default implementation of FactoryAcceptor::GetFactory() More... | |
RCP< ParameterList > | RemoveFactoriesFromList (const ParameterList &list) const |
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FactoryBase () | |
Constructor. More... | |
virtual | ~FactoryBase () |
Destructor. More... | |
int | GetID () const |
return unique factory id More... | |
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virtual | ~BaseClass () |
Destructor. More... | |
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VerbLevel | GetVerbLevel () const |
Get the verbosity level. More... | |
void | SetVerbLevel (const VerbLevel verbLevel) |
Set the verbosity level of this object. More... | |
int | GetProcRankVerbose () const |
Get proc rank used for printing. Do not use this information for any other purpose. More... | |
int | SetProcRankVerbose (int procRank) const |
Set proc rank used for printing. More... | |
bool | IsPrint (MsgType type, int thisProcRankOnly=-1) const |
Find out whether we need to print out information for a specific message type. More... | |
Teuchos::FancyOStream & | GetOStream (MsgType type, int thisProcRankOnly=0) const |
Get an output stream for outputting the input message type. More... | |
Teuchos::FancyOStream & | GetBlackHole () const |
VerboseObject () | |
virtual | ~VerboseObject () |
Destructor. More... | |
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virtual | ~Describable () |
Destructor. More... | |
virtual std::string | ShortClassName () const |
Return the class name of the object, without template parameters and without namespace. More... | |
virtual void | describe (Teuchos::FancyOStream &out_arg, const VerbLevel verbLevel=Default) const |
virtual std::string | description () const |
Return a simple one-line description of this object. More... | |
void | describe (Teuchos::FancyOStream &out, const Teuchos::EVerbosityLevel verbLevel=Teuchos::Describable::verbLevel_default) const |
Print the object with some verbosity level to an FancyOStream object. More... | |
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virtual | ~FactoryAcceptor () |
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ParameterListAcceptorImpl () | |
virtual | ~ParameterListAcceptorImpl ()=default |
virtual void | SetParameterList (const Teuchos::ParameterList ¶mList) |
Set parameters from a parameter list and return with default values. More... | |
virtual const Teuchos::ParameterList & | GetParameterList () const |
void | SetParameter (const std::string &name, const ParameterEntry &entry) |
Set a parameter directly as a ParameterEntry. More... | |
const ParameterEntry & | GetParameter (const std::string &name) const |
Retrieves a const entry with the name name. More... | |
virtual void | GetDocumentation (std::ostream &os) const |
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ParameterListAcceptor () | |
virtual | ~ParameterListAcceptor ()=default |
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RCP< ParameterList > | GetValidParameterList () const |
VisualizationHelpers () | |
Constructor. More... | |
virtual | ~VisualizationHelpers () |
Destructor. More... | |
Private Member Functions | |
void | doJacksPlus_ (std::vector< int > &vertices, std::vector< int > &geomSizes) const |
void | doConvexHulls (std::vector< int > &vertices, std::vector< int > &geomSizes) const |
void | doAlphaHulls_ (std::vector< int > &vertices, std::vector< int > &geomSizes) const |
void | doAlphaHulls2D_ (std::vector< int > &vertices, std::vector< int > &geomSizes) const |
void | doAlphaHulls3D_ (std::vector< int > &vertices, std::vector< int > &geomSizes) const |
void | doGraphEdges_ (std::ofstream &fout, Teuchos::RCP< Matrix > &A, Teuchos::RCP< GraphBase > &G, bool fine, int dofs) const |
void | writeFile_ (std::ofstream &fout, std::string styleName, std::vector< int > &vertices, std::vector< int > &geomSizes) const |
void | buildColormap_ () const |
void | writePVTU_ (std::ofstream &pvtu, std::string baseFname, int numProcs) const |
Private Attributes | |
Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > | xCoords_ |
Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > | yCoords_ |
Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > | zCoords_ |
Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > | cx_ |
Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > | cy_ |
Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > | cz_ |
Teuchos::ArrayRCP< LocalOrdinal > | vertex2AggId_ |
Teuchos::ArrayRCP< LocalOrdinal > | aggSizes_ |
std::vector< bool > | isRoot_ |
bool | doFineGraphEdges_ |
bool | doCoarseGraphEdges_ |
int | numNodes_ |
int | numAggs_ |
int | dims_ |
int | myRank_ |
Teuchos::RCP< const Map > | nodeMap_ |
Teuchos::RCP< const Map > | nodeMapCoarse_ |
int | aggsOffset_ |
Static Private Attributes | |
static const int | CONTRAST_1_ = -1 |
static const int | CONTRAST_2_ = -2 |
static const int | CONTRAST_3_ = -3 |
Constructors/Destructors. | |
AggregationExportFactory () | |
Constructor. More... | |
virtual | ~AggregationExportFactory () |
Destructor. More... | |
void | DeclareInput (Level &fineLevel, Level &coarseLevel) const |
Input. More... | |
Build methods. | |
void | Build (Level &fineLevel, Level &coarseLevel) const |
Build an object with this factory. More... | |
Additional Inherited Members | |
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static void | EnableTimerSync () |
static void | DisableTimerSync () |
static void | EnableMultipleCheckGlobally () |
static void | DisableMultipleCheckGlobally () |
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static void | SetMueLuOStream (const Teuchos::RCP< Teuchos::FancyOStream > &mueluOStream) |
static void | SetMueLuOFileStream (const std::string &filename) |
static Teuchos::RCP< Teuchos::FancyOStream > | GetMueLuOStream () |
static void | SetDefaultVerbLevel (const VerbLevel defaultVerbLevel) |
Set the default (global) verbosity level. More... | |
static VerbLevel | GetDefaultVerbLevel () |
Get the default (global) verbosity level. More... | |
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void | Input (Level &level, const std::string &varName) const |
void | Input (Level &level, const std::string &varName, const std::string &varParamName) const |
template<class T > | |
T | Get (Level &level, const std::string &varName) const |
template<class T > | |
T | Get (Level &level, const std::string &varName, const std::string &varParamName) const |
template<class T > | |
void | Set (Level &level, const std::string &varName, const T &data) const |
bool | IsAvailable (Level &level, const std::string &varName) const |
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void | writeFileVTKOpening (std::ofstream &fout, std::vector< int > &uniqueFine, std::vector< int > &geomSizesFine) const |
void | writeFileVTKNodes (std::ofstream &fout, std::vector< int > &uniqueFine, Teuchos::RCP< const Map > &nodeMap) const |
void | writeFileVTKData (std::ofstream &fout, std::vector< int > &uniqueFine, LocalOrdinal myAggOffset, ArrayRCP< LocalOrdinal > &vertex2AggId, int myRank) const |
void | writeFileVTKCoordinates (std::ofstream &fout, std::vector< int > &uniqueFine, Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &fx, Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &fy, Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &fz, int dim) const |
void | writeFileVTKCells (std::ofstream &fout, std::vector< int > &uniqueFine, std::vector< LocalOrdinal > &vertices, std::vector< LocalOrdinal > &geomSize) const |
void | writeFileVTKClosing (std::ofstream &fout) const |
void | writePVTU (std::ofstream &pvtu, std::string baseFname, int numProcs, bool bFineEdges=false, bool bCoarseEdges=false) const |
void | buildColormap () const |
std::string | getFileName (int numProcs, int myRank, int level, const Teuchos::ParameterList &pL) const |
std::string | getBaseFileName (int numProcs, int level, const Teuchos::ParameterList &pL) const |
std::string | getPVTUFileName (int numProcs, int myRank, int level, const Teuchos::ParameterList &pL) const |
std::string | replaceAll (std::string result, const std::string &replaceWhat, const std::string &replaceWithWhat) const |
std::vector< int > | makeUnique (std::vector< int > &vertices) const |
replaces node indices in vertices with compressed unique indices, and returns list of unique points More... | |
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static void | doPointCloud (std::vector< int > &vertices, std::vector< int > &geomSizes, LO numLocalAggs, LO numFineNodes) |
static void | doJacks (std::vector< int > &vertices, std::vector< int > &geomSizes, LO numLocalAggs, LO numFineNodes, const std::vector< bool > &isRoot, const ArrayRCP< LO > &vertex2AggId) |
static void | doConvexHulls2D (std::vector< int > &vertices, std::vector< int > &geomSizes, LO numLocalAggs, LO numFineNodes, const std::vector< bool > &isRoot, const ArrayRCP< LO > &vertex2AggId, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &xCoords, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &yCoords) |
static void | doConvexHulls3D (std::vector< int > &vertices, std::vector< int > &geomSizes, LO numLocalAggs, LO numFineNodes, const std::vector< bool > &isRoot, const ArrayRCP< LO > &vertex2AggId, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &xCoords, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &yCoords, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &zCoords) |
static void | doCGALConvexHulls2D (std::vector< int > &vertices, std::vector< int > &geomSizes, LO numLocalAggs, LO numFineNodes, const std::vector< bool > &isRoot, const ArrayRCP< LO > &vertex2AggId, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &xCoords, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &yCoords) |
static void | doCGALConvexHulls3D (std::vector< int > &vertices, std::vector< int > &geomSizes, LO numLocalAggs, LO numFineNodes, const std::vector< bool > &isRoot, const ArrayRCP< LO > &vertex2AggId, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &xCoords, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &yCoords, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &zCoords) |
static void | doGraphEdges (std::vector< int > &vertices, std::vector< int > &geomSizes, Teuchos::RCP< GraphBase > &G, Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &fx, Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &fy, Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &fz) |
static int | ccw (const myVec2 &a, const myVec2 &b, const myVec2 &c) |
static myVec3 | crossProduct (myVec3 v1, myVec3 v2) |
static double | dotProduct (myVec2 v1, myVec2 v2) |
static double | dotProduct (myVec3 v1, myVec3 v2) |
static bool | isInFront (myVec3 point, myVec3 inPlane, myVec3 n) |
static double | mymagnitude (myVec2 vec) |
static double | mymagnitude (myVec3 vec) |
static double | distance (myVec2 p1, myVec2 p2) |
static double | distance (myVec3 p1, myVec3 p2) |
static myVec2 | vecSubtract (myVec2 v1, myVec2 v2) |
static myVec3 | vecSubtract (myVec3 v1, myVec3 v2) |
static myVec2 | getNorm (myVec2 v) |
static myVec3 | getNorm (myVec3 v1, myVec3 v2, myVec3 v3) |
static double | pointDistFromTri (myVec3 point, myVec3 v1, myVec3 v2, myVec3 v3) |
static std::vector< myTriangle > | processTriangle (std::list< myTriangle > &tris, myTriangle tri, std::list< int > &pointsInFront, myVec3 &barycenter, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &xCoords, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &yCoords, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &zCoords) |
static std::vector< int > | giftWrap (std::vector< myVec2 > &points, std::vector< int > &nodes, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &xCoords, const Teuchos::ArrayRCP< const typename Teuchos::ScalarTraits< Scalar >::coordinateType > &yCoords) |
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static bool | timerSync_ = false |
Factory to export aggregation info or visualize aggregates using VTK.
Note, that some routines only work for 1 dof per node.
Parameter | type | default | master.xml | validated | requested | description |
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aggregation: output filename | string | * | filename for VTK-style visualization output | |||
aggregation: output file: time step | int | 0 | * | time step (overwrites 'TIMESTEP' in output file name) | ||
aggregation: output file: iter | int | 0 | * | nonlinear iteration (overwrites 'ITER' in output file name) | ||
aggregation: output file: agg style | string | Point Cloud | * | style of aggregation visualization for VTK output. Can be either "Point Cloud", "Jacks", "Convex Hulls" or "Alpha Hulls" | ||
aggregation: output file: fine graph edges | bool | false | * | Draw fine node connections in VTK output (only works for 1 dofs per node!) | ||
aggregation: output file: build colormap | bool | false | * | Output a random color map for paraView in a separate xml file. | ||
Output filename | string | * | Output file name for aggregation data export (outdated, do not use) | |||
Output file: time step | int | 0 | * | time step variable for output filename (outdated, do not use) | ||
Output file: iter | int | 0 | * | nonlinear iteration variable for output filename (outdated, do not use) | ||
A | Factory | Teuchos::null | * | * | Factory for A | |
Coordinates | Factory | Teuchos::null | * | * | Factory for Coordinates (only necessary for vtk output) | |
Graph | Factory | Teuchos::null | * | * | Factory for Graph of A (only necessary for vtk output) | |
Aggregates | Factory | Teuchos::null | * | * | Factory for Aggregates | |
UnAmalgamationInfo | Factory | Teuchos::null | * | * | Factory for UnAmalgamationInfo | |
DofsPerNode | Factory | Teuchos::null | * | * | Factory for DofsPerNode |
The * in the master.xml
column denotes that the parameter is defined in the master.xml
file.
The * in the validated
column means that the parameter is declared in the list of valid input parameters (see AggregationExportFactory::GetValidParameters).
The * in the requested
column states that the data is requested as input with all dependencies (see AggregationExportFactory::DeclareInput).
Definition at line 54 of file MueLu_AggregationExportFactory_fwd.hpp.
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Constructor.
Definition at line 120 of file MueLu_AggregationExportFactory_decl.hpp.
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Destructor.
Definition at line 131 of file MueLu_AggregationExportFactory_decl.hpp.
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Return a const parameter list of valid parameters that setParameterList() will accept.
Also define the default values of parameters according to the input parameter list.
Reimplemented from MueLu::Factory.
Definition at line 88 of file MueLu_AggregationExportFactory_def.hpp.
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Input.
Implements MueLu::TwoLevelFactoryBase.
Definition at line 118 of file MueLu_AggregationExportFactory_def.hpp.
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Build an object with this factory.
Implements MueLu::TwoLevelFactoryBase.
Definition at line 140 of file MueLu_AggregationExportFactory_def.hpp.
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Definition at line 370 of file MueLu_AggregationExportFactory_def.hpp.
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Definition at line 376 of file MueLu_AggregationExportFactory_def.hpp.
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Definition at line 386 of file MueLu_AggregationExportFactory_def.hpp.
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Definition at line 396 of file MueLu_AggregationExportFactory_def.hpp.
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Definition at line 456 of file MueLu_AggregationExportFactory_def.hpp.
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Definition at line 551 of file MueLu_AggregationExportFactory_def.hpp.
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Definition at line 816 of file MueLu_AggregationExportFactory_def.hpp.
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Definition at line 933 of file MueLu_AggregationExportFactory_def.hpp.
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Definition at line 960 of file MueLu_AggregationExportFactory_def.hpp.
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Definition at line 167 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 168 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 169 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 172 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 173 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 174 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 175 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 176 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 177 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 178 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 179 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 180 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 181 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 182 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 183 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 184 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 185 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 186 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 187 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 188 of file MueLu_AggregationExportFactory_decl.hpp.
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Definition at line 189 of file MueLu_AggregationExportFactory_decl.hpp.