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BioNetGen is software for the specification and simulation of rule-based models of biochemical systems, including signal transduction, metabolic, and genetic regulatory networks. The BioNetGen language has recently been extended to include explicit representation of compartments. A review of methods for rule-based modeling is available in Science Signaling (Sci. STKE, 18 July 2006, Issue 344, p. re6). BioNetGen is presently a mixture of Perl and C++. Network generation is currently implemented in Perl, the network simulator is C++, and a new language parser is being developed with ANTLR.
| Package | Summary | Distribution | Download |
| bionetgen-2.9.0-8.fc42.aarch64.html | Software for rule-based modeling of biochemical systems | Fedora Rawhide for aarch64 | bionetgen-2.9.0-8.fc42.aarch64.rpm |
| bionetgen-2.9.0-8.fc42.ppc64le.html | Software for rule-based modeling of biochemical systems | Fedora Rawhide for ppc64le | bionetgen-2.9.0-8.fc42.ppc64le.rpm |
| bionetgen-2.9.0-8.fc42.s390x.html | Software for rule-based modeling of biochemical systems | Fedora Rawhide for s390x | bionetgen-2.9.0-8.fc42.s390x.rpm |
| bionetgen-2.9.0-8.fc42.x86_64.html | Software for rule-based modeling of biochemical systems | Fedora Rawhide for x86_64 | bionetgen-2.9.0-8.fc42.x86_64.rpm |
| bionetgen-2.9.0-4.fc41.aarch64.html | Software for rule-based modeling of biochemical systems | Fedora 41 for aarch64 | bionetgen-2.9.0-4.fc41.aarch64.rpm |
| bionetgen-2.9.0-4.fc41.ppc64le.html | Software for rule-based modeling of biochemical systems | Fedora 41 for ppc64le | bionetgen-2.9.0-4.fc41.ppc64le.rpm |
| bionetgen-2.9.0-4.fc41.s390x.html | Software for rule-based modeling of biochemical systems | Fedora 41 for s390x | bionetgen-2.9.0-4.fc41.s390x.rpm |
| bionetgen-2.9.0-4.fc41.x86_64.html | Software for rule-based modeling of biochemical systems | Fedora 41 for x86_64 | bionetgen-2.9.0-4.fc41.x86_64.rpm |
| bionetgen-2.9.0-3.fc40.aarch64.html | Software for rule-based modeling of biochemical systems | Fedora 40 for aarch64 | bionetgen-2.9.0-3.fc40.aarch64.rpm |
| bionetgen-2.9.0-3.fc40.ppc64le.html | Software for rule-based modeling of biochemical systems | Fedora 40 for ppc64le | bionetgen-2.9.0-3.fc40.ppc64le.rpm |
| bionetgen-2.9.0-3.fc40.s390x.html | Software for rule-based modeling of biochemical systems | Fedora 40 for s390x | bionetgen-2.9.0-3.fc40.s390x.rpm |
| bionetgen-2.9.0-3.fc40.x86_64.html | Software for rule-based modeling of biochemical systems | Fedora 40 for x86_64 | bionetgen-2.9.0-3.fc40.x86_64.rpm |
| bionetgen-2.9.0-1.fc39.aarch64.html | Software for rule-based modeling of biochemical systems | Fedora 39 for aarch64 | bionetgen-2.9.0-1.fc39.aarch64.rpm |
| bionetgen-2.9.0-1.fc39.ppc64le.html | Software for rule-based modeling of biochemical systems | Fedora 39 for ppc64le | bionetgen-2.9.0-1.fc39.ppc64le.rpm |
| bionetgen-2.9.0-1.fc39.s390x.html | Software for rule-based modeling of biochemical systems | Fedora 39 for s390x | bionetgen-2.9.0-1.fc39.s390x.rpm |
| bionetgen-2.9.0-1.fc39.x86_64.html | Software for rule-based modeling of biochemical systems | Fedora 39 for x86_64 | bionetgen-2.9.0-1.fc39.x86_64.rpm |
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