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TREE-PUZZLE is a computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood. It implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.
| Package | Summary | Distribution | Download |
| tree-puzzle-5.2-6.x86_64.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | OpenMandriva 5.0 for x86_64 | tree-puzzle-5.2-6.x86_64.rpm |
| tree-puzzle-5.2-6.x86_64.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | OpenMandriva Cooker for x86_64 | tree-puzzle-5.2-6.x86_64.rpm |
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