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velvet-1.0.13-1.el4.rf RPM for ppc

From DAG Fabian packages for Red Hat Linux el4 ppc

Name: velvet Distribution: RPMForge repository for Red Hat Enterprise Linux 4
Version: 1.0.13 Vendor: RPMForge
Release: 1.el4.rf Build date: Tue Oct 26 15:36:09 2010
Group: Applications/Engineering Build host: neodyme.arrfab.net
Size: 1657531 Source RPM: velvet-1.0.13-1.el4.rf.src.rpm
Packager: Fabian Arrotin <fabian.arrotin@arrfab.net>
Url: http://www.ebi.ac.uk/~zerbino/velvet/
Summary: Sequence assembler for very short reads
 
Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near
Cambridge, in the United Kingdom.

Velvet currently takes in short read sequences, removes errors then produces
high quality unique contigs. It then uses paired-end read and long read
information, when available, to retrieve the repeated areas between contigs.

This package takes the following arguments at rpmbuild:

    --define 'categories <INTEGER>'
        set the CATEGORIES parameter (default 2)

    --define 'maxkmerlength <INTEGER>'
        set the MAXKMERLENGTH parameter (default 31)

This package builds the sequencespace and colorspace versions of Velvet.

Provides

Requires

License

GPL

Changelog

* Sat Oct 09 2010 Steve Huff <shuff@vecna.org> - 1.0.13-1
  - Initial package.

Files

/usr/bin/velvetg
/usr/bin/velvetg_de
/usr/bin/velveth
/usr/bin/velveth_de
/usr/share/doc/velvet-1.0.13
/usr/share/doc/velvet-1.0.13/CREDITS.txt
/usr/share/doc/velvet-1.0.13/ChangeLog
/usr/share/doc/velvet-1.0.13/Columbus_manual.pdf
/usr/share/doc/velvet-1.0.13/LICENSE.txt
/usr/share/doc/velvet-1.0.13/Manual.pdf
/usr/share/doc/velvet-1.0.13/README.txt
/usr/share/doc/velvet-1.0.13/contrib
/usr/share/doc/velvet-1.0.13/contrib/AssemblyAssembler1.3
/usr/share/doc/velvet-1.0.13/contrib/AssemblyAssembler1.3/.DS_Store
/usr/share/doc/velvet-1.0.13/contrib/AssemblyAssembler1.3/AssemblyAssembler1.3.py
/usr/share/doc/velvet-1.0.13/contrib/AssemblyAssembler1.3/README.txt
/usr/share/doc/velvet-1.0.13/contrib/README.txt
/usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7
/usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7/README
/usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7/VelvetOpt
/usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7/VelvetOpt/Assembly.pm
/usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7/VelvetOpt/Utils.pm
/usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7/VelvetOpt/gwrap.pm
/usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7/VelvetOpt/hwrap.pm
/usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7/VelvetOptimiser.pl
/usr/share/doc/velvet-1.0.13/contrib/afg_handling
/usr/share/doc/velvet-1.0.13/contrib/afg_handling/asmbly_splitter.pl
/usr/share/doc/velvet-1.0.13/contrib/afg_handling/snp_view.pl
/usr/share/doc/velvet-1.0.13/contrib/columbus_scripts
/usr/share/doc/velvet-1.0.13/contrib/columbus_scripts/enlarge_exons.pl
/usr/share/doc/velvet-1.0.13/contrib/columbus_scripts/gff2fasta.pl
/usr/share/doc/velvet-1.0.13/contrib/columbus_scripts/merge_gtf_exons.pl
/usr/share/doc/velvet-1.0.13/contrib/estimate-exp_cov
/usr/share/doc/velvet-1.0.13/contrib/estimate-exp_cov/velvet-estimate-exp_cov.pl
/usr/share/doc/velvet-1.0.13/contrib/extractContigReads
/usr/share/doc/velvet-1.0.13/contrib/extractContigReads/extractContigReads.pl
/usr/share/doc/velvet-1.0.13/contrib/fasta2agp
/usr/share/doc/velvet-1.0.13/contrib/fasta2agp/fasta2agp.pl
/usr/share/doc/velvet-1.0.13/contrib/layout
/usr/share/doc/velvet-1.0.13/contrib/layout/README.txt
/usr/share/doc/velvet-1.0.13/contrib/layout/graph2.py
/usr/share/doc/velvet-1.0.13/contrib/observed-insert-length.pl
/usr/share/doc/velvet-1.0.13/contrib/observed-insert-length.pl/observed-insert-length.pl
/usr/share/doc/velvet-1.0.13/contrib/select_paired
/usr/share/doc/velvet-1.0.13/contrib/select_paired/select_paired.pl
/usr/share/doc/velvet-1.0.13/contrib/show_repeats
/usr/share/doc/velvet-1.0.13/contrib/show_repeats/show_repeats.pl
/usr/share/doc/velvet-1.0.13/contrib/shuffleSequences_fasta
/usr/share/doc/velvet-1.0.13/contrib/shuffleSequences_fasta/kseq.h
/usr/share/doc/velvet-1.0.13/contrib/shuffleSequences_fasta/shuffleSeqs-fast.c
/usr/share/doc/velvet-1.0.13/contrib/shuffleSequences_fasta/shuffleSequences_fasta.pl
/usr/share/doc/velvet-1.0.13/contrib/shuffleSequences_fasta/shuffleSequences_fasta.py
/usr/share/doc/velvet-1.0.13/contrib/shuffleSequences_fasta/shuffleSequences_fasta.sh
/usr/share/doc/velvet-1.0.13/shuffleSequences_fasta.pl
/usr/share/doc/velvet-1.0.13/shuffleSequences_fastq.pl

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Fabrice Bellet, Tue Jul 9 08:56:54 2024