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Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom. Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired-end read and long read information, when available, to retrieve the repeated areas between contigs. This package takes the following arguments at rpmbuild: --define 'categories <INTEGER>' set the CATEGORIES parameter (default 2) --define 'maxkmerlength <INTEGER>' set the MAXKMERLENGTH parameter (default 31) This package builds the sequencespace and colorspace versions of Velvet.
| Package | Summary | Distribution | Download |
| velvet-1.0.13-1.el6.rf.i686.html | Sequence assembler for very short reads | DAG packages for Red Hat Linux el6 i386 | velvet-1.0.13-1.el6.rf.i686.rpm |
| velvet-1.0.13-1.el6.rf.x86_64.html | Sequence assembler for very short reads | DAG packages for Red Hat Linux el6 x86_64 | velvet-1.0.13-1.el6.rf.x86_64.rpm |
| velvet-1.0.13-1.el5.rf.i386.html | Sequence assembler for very short reads | DAG packages for Red Hat Linux el5 i386 | velvet-1.0.13-1.el5.rf.i386.rpm |
| velvet-1.0.13-1.el5.rf.ppc.html | Sequence assembler for very short reads | DAG Fabian packages for Red Hat Linux el5 ppc | velvet-1.0.13-1.el5.rf.ppc.rpm |
| velvet-1.0.13-1.el5.rf.x86_64.html | Sequence assembler for very short reads | DAG packages for Red Hat Linux el5 x86_64 | velvet-1.0.13-1.el5.rf.x86_64.rpm |
| velvet-1.0.13-1.el4.rf.i386.html | Sequence assembler for very short reads | DAG packages for Red Hat Linux el4 i386 | velvet-1.0.13-1.el4.rf.i386.rpm |
| velvet-1.0.13-1.el4.rf.ppc.html | Sequence assembler for very short reads | DAG Fabian packages for Red Hat Linux el4 ppc | velvet-1.0.13-1.el4.rf.ppc.rpm |
| velvet-1.0.13-1.el4.rf.x86_64.html | Sequence assembler for very short reads | DAG packages for Red Hat Linux el4 x86_64 | velvet-1.0.13-1.el4.rf.x86_64.rpm |
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