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| Name: velvet | Distribution: Dag Apt Repository for Red Hat Enterprise Linux 4 |
| Version: 1.0.13 | Vendor: Dag Apt Repository, http://dag.wieers.com/apt/ |
| Release: 1.el4.rf | Build date: Wed Oct 13 19:19:25 2010 |
| Group: Applications/Engineering | Build host: lisse.hasselt.wieers.com |
| Size: 1708627 | Source RPM: velvet-1.0.13-1.el4.rf.src.rpm |
| Packager: Steve Huff <shuff@vecna.org> | |
| Url: http://www.ebi.ac.uk/~zerbino/velvet/ | |
| Summary: Sequence assembler for very short reads | |
Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near
Cambridge, in the United Kingdom.
Velvet currently takes in short read sequences, removes errors then produces
high quality unique contigs. It then uses paired-end read and long read
information, when available, to retrieve the repeated areas between contigs.
This package takes the following arguments at rpmbuild:
--define 'categories <INTEGER>'
set the CATEGORIES parameter (default 2)
--define 'maxkmerlength <INTEGER>'
set the MAXKMERLENGTH parameter (default 31)
This package builds the sequencespace and colorspace versions of Velvet.
GPL
* Fri Oct 08 2010 Steve Huff <shuff@vecna.org> - 1.0.13-1 - 9172/shuff - Initial package.
/usr/bin/velvetg /usr/bin/velvetg_de /usr/bin/velveth /usr/bin/velveth_de /usr/share/doc/velvet-1.0.13 /usr/share/doc/velvet-1.0.13/CREDITS.txt /usr/share/doc/velvet-1.0.13/ChangeLog /usr/share/doc/velvet-1.0.13/Columbus_manual.pdf /usr/share/doc/velvet-1.0.13/LICENSE.txt /usr/share/doc/velvet-1.0.13/Manual.pdf /usr/share/doc/velvet-1.0.13/README.txt /usr/share/doc/velvet-1.0.13/contrib /usr/share/doc/velvet-1.0.13/contrib/AssemblyAssembler1.3 /usr/share/doc/velvet-1.0.13/contrib/AssemblyAssembler1.3/.DS_Store /usr/share/doc/velvet-1.0.13/contrib/AssemblyAssembler1.3/AssemblyAssembler1.3.py /usr/share/doc/velvet-1.0.13/contrib/AssemblyAssembler1.3/README.txt /usr/share/doc/velvet-1.0.13/contrib/README.txt /usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7 /usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7/README /usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7/VelvetOpt /usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7/VelvetOpt/Assembly.pm /usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7/VelvetOpt/Utils.pm /usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7/VelvetOpt/gwrap.pm /usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7/VelvetOpt/hwrap.pm /usr/share/doc/velvet-1.0.13/contrib/VelvetOptimiser-2.1.7/VelvetOptimiser.pl /usr/share/doc/velvet-1.0.13/contrib/afg_handling /usr/share/doc/velvet-1.0.13/contrib/afg_handling/asmbly_splitter.pl /usr/share/doc/velvet-1.0.13/contrib/afg_handling/snp_view.pl /usr/share/doc/velvet-1.0.13/contrib/columbus_scripts /usr/share/doc/velvet-1.0.13/contrib/columbus_scripts/enlarge_exons.pl /usr/share/doc/velvet-1.0.13/contrib/columbus_scripts/gff2fasta.pl /usr/share/doc/velvet-1.0.13/contrib/columbus_scripts/merge_gtf_exons.pl /usr/share/doc/velvet-1.0.13/contrib/estimate-exp_cov /usr/share/doc/velvet-1.0.13/contrib/estimate-exp_cov/velvet-estimate-exp_cov.pl /usr/share/doc/velvet-1.0.13/contrib/extractContigReads /usr/share/doc/velvet-1.0.13/contrib/extractContigReads/extractContigReads.pl /usr/share/doc/velvet-1.0.13/contrib/fasta2agp /usr/share/doc/velvet-1.0.13/contrib/fasta2agp/fasta2agp.pl /usr/share/doc/velvet-1.0.13/contrib/layout /usr/share/doc/velvet-1.0.13/contrib/layout/README.txt /usr/share/doc/velvet-1.0.13/contrib/layout/graph2.py /usr/share/doc/velvet-1.0.13/contrib/observed-insert-length.pl /usr/share/doc/velvet-1.0.13/contrib/observed-insert-length.pl/observed-insert-length.pl /usr/share/doc/velvet-1.0.13/contrib/select_paired /usr/share/doc/velvet-1.0.13/contrib/select_paired/select_paired.pl /usr/share/doc/velvet-1.0.13/contrib/show_repeats /usr/share/doc/velvet-1.0.13/contrib/show_repeats/show_repeats.pl /usr/share/doc/velvet-1.0.13/contrib/shuffleSequences_fasta /usr/share/doc/velvet-1.0.13/contrib/shuffleSequences_fasta/kseq.h /usr/share/doc/velvet-1.0.13/contrib/shuffleSequences_fasta/shuffleSeqs-fast.c /usr/share/doc/velvet-1.0.13/contrib/shuffleSequences_fasta/shuffleSequences_fasta.pl /usr/share/doc/velvet-1.0.13/contrib/shuffleSequences_fasta/shuffleSequences_fasta.py /usr/share/doc/velvet-1.0.13/contrib/shuffleSequences_fasta/shuffleSequences_fasta.sh /usr/share/doc/velvet-1.0.13/shuffleSequences_fasta.pl /usr/share/doc/velvet-1.0.13/shuffleSequences_fastq.pl
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